{"id":"https://openalex.org/W2181121096","doi":"https://doi.org/10.1093/bioinformatics/btv599","title":"BioSynther: a customized biosynthetic potential explorer","display_name":"BioSynther: a customized biosynthetic potential explorer","publication_year":2015,"publication_date":"2015-10-14","ids":{"openalex":"https://openalex.org/W2181121096","doi":"https://doi.org/10.1093/bioinformatics/btv599","mag":"2181121096","pmid":"https://pubmed.ncbi.nlm.nih.gov/26471457"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv599","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/472/49016776/bioinformatics_32_3_472.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/472/49016776/bioinformatics_32_3_472.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102968278","display_name":"Weizhong Tu","orcid":"https://orcid.org/0000-0002-3820-9956"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weizhong Tu","raw_affiliation_strings":["1 Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University), Ministry of Education, and Wuhan University School of Pharmaceutical Sciences, Wuhan 430071, People\u2019s Republic of China,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University), Ministry of Education, and Wuhan University School of Pharmaceutical Sciences, Wuhan 430071, People\u2019s Republic of China,","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340491","display_name":"Haoran Zhang","orcid":"https://orcid.org/0000-0002-7059-572X"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Zhang","raw_affiliation_strings":["2 State Key Laboratory of Software Engineering (Wuhan University) and Wuhan University School of Computer Sciences, Wuhan 430072, People\u2019s Republic of China and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 State Key Laboratory of Software Engineering (Wuhan University) and Wuhan University School of Computer Sciences, Wuhan 430072, People\u2019s Republic of China and","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100446333","display_name":"Juan Liu","orcid":"https://orcid.org/0000-0003-2981-8255"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Liu","raw_affiliation_strings":["2 State Key Laboratory of Software Engineering (Wuhan University) and Wuhan University School of Computer Sciences, Wuhan 430072, People\u2019s Republic of China and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 State Key Laboratory of Software Engineering (Wuhan University) and Wuhan University School of Computer Sciences, Wuhan 430072, People\u2019s Republic of China and","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101770220","display_name":"Qian\u2010Nan Hu","orcid":"https://orcid.org/0000-0001-5213-472X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qian-Nan Hu","raw_affiliation_strings":["1 Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University), Ministry of Education, and Wuhan University School of Pharmaceutical Sciences, Wuhan 430071, People\u2019s Republic of China,","3 Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University), Ministry of Education, and Wuhan University School of Pharmaceutical Sciences, Wuhan 430071, People\u2019s Republic of China,","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"3 Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, People\u2019s Republic of China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101770220"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I37461747","https://openalex.org/I4210139473"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6484,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.83532835,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"32","issue":"3","first_page":"472","last_page":"473"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.2865000069141388,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.2865000069141388,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.2603999972343445,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.15060000121593475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.9415276050567627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6606146693229675},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3523055911064148},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34620749950408936},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3225964307785034},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2629386782646179},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2013622522354126}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.9415276050567627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6606146693229675},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3523055911064148},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34620749950408936},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3225964307785034},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2629386782646179},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2013622522354126}],"mesh":[{"descriptor_ui":"D001547","descriptor_name":"Benzaldehydes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001547","descriptor_name":"Benzaldehydes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001547","descriptor_name":"Benzaldehydes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001547","descriptor_name":"Benzaldehydes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001547","descriptor_name":"Benzaldehydes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001547","descriptor_name":"Benzaldehydes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060847","descriptor_name":"Metabolic Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060847","descriptor_name":"Metabolic Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060847","descriptor_name":"Metabolic Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv599","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/472/49016776/bioinformatics_32_3_472.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26471457","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26471457","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/3/472","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/3/472","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv599","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/472/49016776/bioinformatics_32_3_472.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2181121096.pdf"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1964232618","https://openalex.org/W1975147762","https://openalex.org/W1978119727","https://openalex.org/W1985364973","https://openalex.org/W1990088060","https://openalex.org/W1990226486","https://openalex.org/W1992043510","https://openalex.org/W2050423447","https://openalex.org/W2068526246","https://openalex.org/W2103612757","https://openalex.org/W2104619491","https://openalex.org/W2108723491","https://openalex.org/W2129860041","https://openalex.org/W2132207273","https://openalex.org/W2148734497","https://openalex.org/W2157967771","https://openalex.org/W2168504993","https://openalex.org/W2395455295"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1573015311","https://openalex.org/W1570419641","https://openalex.org/W4386509167","https://openalex.org/W2889938001","https://openalex.org/W4293771607","https://openalex.org/W3165034028","https://openalex.org/W2296499206","https://openalex.org/W3210319767","https://openalex.org/W2917626761"],"abstract_inverted_index":{"MOTIVATION:":[0],"One":[1],"of":[2,7,15,27,58],"the":[3,19,24,44,55],"most":[4],"promising":[5],"applications":[6],"biosynthetic":[8,25,34,56,78],"methods":[9],"is":[10,51,108],"to":[11,53,76],"produce":[12],"chemical":[13,29],"products":[14],"high":[16],"value":[17],"from":[18],"ready-made":[20],"chemicals.":[21],"To":[22],"explore":[23,54,77],"potentials":[26,57],"a":[28,31,47,95],"as":[30,94],"synthesis":[32],"precursor,":[33],"databases":[35],"and":[36,64,101],"related":[37],"chemoinformatics":[38],"tools":[39],"are":[40,118],"urgently":[41],"needed.":[42],"In":[43],"present":[45],"work,":[46],"web-based":[48],"tool,":[49],"BioSynther,":[50],"developed":[52],"precursor":[59],"chemicals":[60],"using":[61],"BKM-react,":[62],"Rhea,":[63],"more":[65],"than":[66],"50,000":[67],"in-house":[68],"RxnFinder":[69],"reactions":[70],"manually":[71],"curated.":[72],"BioSynther":[73,107],"allows":[74],"researchers":[75],"potentials,":[79],"through":[80],"so":[81],"far":[82],"known":[83],"biochemical":[84],"reactions,":[85],"step":[86,88],"by":[87],"interactively,":[89],"which":[90],"could":[91],"be":[92],"used":[93],"useful":[96],"tool":[97],"in":[98],"metabolic":[99],"engineering":[100],"synthetic":[102],"biology.":[103],"AVAILABILITY":[104],"AND":[105],"IMPLEMENTATION:":[106],"available":[109,119],"at:":[110],"http://www.lifemodules.org/BioSynther/.":[111],"CONTACT:":[112],"hu_qn@tib.cas.cn.":[113],"SUPPLEMENTARY":[114],"INFORMATION:":[115],"Supplementary":[116],"data":[117],"at":[120],"Bioinformatics":[121],"online.":[122]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
