{"id":"https://openalex.org/W2275091356","doi":"https://doi.org/10.1093/bioinformatics/btv595","title":"NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores","display_name":"NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores","publication_year":2015,"publication_date":"2015-10-26","ids":{"openalex":"https://openalex.org/W2275091356","doi":"https://doi.org/10.1093/bioinformatics/btv595","mag":"2275091356","pmid":"https://pubmed.ncbi.nlm.nih.gov/26504145"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv595","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv595","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011478718","display_name":"Hyojung Ryu","orcid":"https://orcid.org/0000-0002-2276-850X"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Hyojung Ryu","raw_affiliation_strings":["1 Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea,","2 Department of Nanobiotechnology and Bioinformatics, University of Science and Technology, Yuseong-Gu, Daejeon 305-350, the Republic of Korea and"],"affiliations":[{"raw_affiliation_string":"1 Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea,","institution_ids":["https://openalex.org/I73616290"]},{"raw_affiliation_string":"2 Department of Nanobiotechnology and Bioinformatics, University of Science and Technology, Yuseong-Gu, Daejeon 305-350, the Republic of Korea and","institution_ids":["https://openalex.org/I88761825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070868483","display_name":"Gyutae Lim","orcid":"https://orcid.org/0000-0002-8253-7631"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"GyuTae Lim","raw_affiliation_strings":["1 Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea,","2 Department of Nanobiotechnology and Bioinformatics, University of Science and Technology, Yuseong-Gu, Daejeon 305-350, the Republic of Korea and"],"affiliations":[{"raw_affiliation_string":"1 Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea,","institution_ids":["https://openalex.org/I73616290"]},{"raw_affiliation_string":"2 Department of Nanobiotechnology and Bioinformatics, University of Science and Technology, Yuseong-Gu, Daejeon 305-350, the Republic of Korea and","institution_ids":["https://openalex.org/I88761825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038059436","display_name":"Bong Hyun Sung","orcid":"https://orcid.org/0000-0002-8992-1118"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Bong Hyun Sung","raw_affiliation_strings":["3 Bioenergy and Biochemical Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea"],"affiliations":[{"raw_affiliation_string":"3 Bioenergy and Biochemical Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101413439","display_name":"Jinhyuk Lee","orcid":"https://orcid.org/0000-0002-7437-1846"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinhyuk Lee","raw_affiliation_strings":["1 Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea,","2 Department of Nanobiotechnology and Bioinformatics, University of Science and Technology, Yuseong-Gu, Daejeon 305-350, the Republic of Korea and"],"affiliations":[{"raw_affiliation_string":"1 Korean Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, the Republic of Korea,","institution_ids":["https://openalex.org/I73616290"]},{"raw_affiliation_string":"2 Department of Nanobiotechnology and Bioinformatics, University of Science and Technology, Yuseong-Gu, Daejeon 305-350, the Republic of Korea and","institution_ids":["https://openalex.org/I88761825"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5011478718"],"corresponding_institution_ids":["https://openalex.org/I73616290","https://openalex.org/I88761825"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4519,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.66988527,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"32","issue":"4","first_page":"611","last_page":"613"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6034905910491943},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39165496826171875},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33278289437294006}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6034905910491943},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39165496826171875},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33278289437294006}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv595","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv595","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26504145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26504145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:http://repository.kribb.re.kr:8080/:201005/13189","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btv595","pdf_url":null,"source":{"id":"https://openalex.org/S4406922719","display_name":"KRIBB Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"/dspace/upload/original/13880.pdf","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/4/611","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/4/611","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.8100000023841858}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2012287373","https://openalex.org/W2029680343","https://openalex.org/W2043290929","https://openalex.org/W2069735832","https://openalex.org/W2087004571","https://openalex.org/W2099688820","https://openalex.org/W2104245002","https://openalex.org/W2125408131","https://openalex.org/W2132262459","https://openalex.org/W2134731229","https://openalex.org/W2170338669"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2317200988","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2350741829"],"abstract_inverted_index":{"NMRe":[0],"is":[1],"available":[2],"at":[3],"http://psb.kobic.re.kr/nmre/.":[4]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
