{"id":"https://openalex.org/W2180027813","doi":"https://doi.org/10.1093/bioinformatics/btv583","title":"miTRATA: a web-based tool for <i>mi</i>croRNA <i>Tr</i>uncation <i>a</i>nd <i>T</i>ailing <i>A</i>nalysis","display_name":"miTRATA: a web-based tool for <i>mi</i>croRNA <i>Tr</i>uncation <i>a</i>nd <i>T</i>ailing <i>A</i>nalysis","publication_year":2015,"publication_date":"2015-10-10","ids":{"openalex":"https://openalex.org/W2180027813","doi":"https://doi.org/10.1093/bioinformatics/btv583","mag":"2180027813","pmid":"https://pubmed.ncbi.nlm.nih.gov/26454275"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv583","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv583","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/450/49016828/bioinformatics_32_3_450.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/450/49016828/bioinformatics_32_3_450.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038336931","display_name":"Parth Patel","orcid":"https://orcid.org/0000-0002-0195-3933"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I1312106833","display_name":"Biotechnology Institute","ror":"https://ror.org/00s1jty20","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1312106833"]}],"countries":["IN","US"],"is_corresponding":true,"raw_author_name":"Parth Patel","raw_affiliation_strings":["1 Center for Bioinformatics and Computational Biology and","2 Delaware Biotechnology Institute and"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics and Computational Biology and","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"2 Delaware Biotechnology Institute and","institution_ids":["https://openalex.org/I1312106833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063845228","display_name":"S. Deepthi Ramachandruni","orcid":null},"institutions":[{"id":"https://openalex.org/I1312106833","display_name":"Biotechnology Institute","ror":"https://ror.org/00s1jty20","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1312106833"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Deepthi Ramachandruni","raw_affiliation_strings":["2 Delaware Biotechnology Institute and"],"affiliations":[{"raw_affiliation_string":"2 Delaware Biotechnology Institute and","institution_ids":["https://openalex.org/I1312106833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004628544","display_name":"Atul Kakrana","orcid":"https://orcid.org/0000-0002-1495-7351"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I1312106833","display_name":"Biotechnology Institute","ror":"https://ror.org/00s1jty20","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1312106833"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Atul Kakrana","raw_affiliation_strings":["1 Center for Bioinformatics and Computational Biology and","2 Delaware Biotechnology Institute and"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics and Computational Biology and","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"2 Delaware Biotechnology Institute and","institution_ids":["https://openalex.org/I1312106833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032859182","display_name":"Mayumi Nakano","orcid":"https://orcid.org/0000-0001-9317-4509"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mayumi Nakano","raw_affiliation_strings":["3 Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19711, USA"],"affiliations":[{"raw_affiliation_string":"3 Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19711, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076526804","display_name":"Blake C. Meyers","orcid":"https://orcid.org/0000-0003-3436-6097"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I1312106833","display_name":"Biotechnology Institute","ror":"https://ror.org/00s1jty20","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1312106833"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Blake C. Meyers","raw_affiliation_strings":["2 Delaware Biotechnology Institute and","3 Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19711, USA"],"affiliations":[{"raw_affiliation_string":"2 Delaware Biotechnology Institute and","institution_ids":["https://openalex.org/I1312106833"]},{"raw_affiliation_string":"3 Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19711, USA","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5038336931"],"corresponding_institution_ids":["https://openalex.org/I1312106833","https://openalex.org/I4210148697"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5091,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.82609657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"32","issue":"3","first_page":"450","last_page":"452"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7259204387664795},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7256584763526917},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6836703419685364},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.5244698524475098},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.47099894285202026},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4651440382003784},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4504958391189575},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.4209184944629669},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3324469327926636},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.3309060335159302},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3300931751728058},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3249119520187378},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21772760152816772},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10217133164405823}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7259204387664795},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7256584763526917},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6836703419685364},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.5244698524475098},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.47099894285202026},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4651440382003784},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4504958391189575},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.4209184944629669},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3324469327926636},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.3309060335159302},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3300931751728058},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3249119520187378},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21772760152816772},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10217133164405823},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv583","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv583","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/450/49016828/bioinformatics_32_3_450.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26454275","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26454275","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/3/450","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/3/450","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv583","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv583","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/3/450/49016828/bioinformatics_32_3_450.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G408591940","display_name":null,"funder_award_id":"2012-67013","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2180027813.pdf","grobid_xml":"https://content.openalex.org/works/W2180027813.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1976961172","https://openalex.org/W2015105691","https://openalex.org/W2019993012","https://openalex.org/W2056376913","https://openalex.org/W2077327925","https://openalex.org/W2079320075","https://openalex.org/W2110757258","https://openalex.org/W2114714229","https://openalex.org/W2122795897","https://openalex.org/W2123701167","https://openalex.org/W2130435778"],"related_works":["https://openalex.org/W2753132265","https://openalex.org/W4234766820","https://openalex.org/W4321232174","https://openalex.org/W3117520771","https://openalex.org/W2482048793","https://openalex.org/W4388027365","https://openalex.org/W3113257914","https://openalex.org/W2938860153","https://openalex.org/W2323693199","https://openalex.org/W3009983268"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
