{"id":"https://openalex.org/W2229453122","doi":"https://doi.org/10.1093/bioinformatics/btv570","title":"Cell line name recognition in support of the identification of synthetic lethality in cancer from text","display_name":"Cell line name recognition in support of the identification of synthetic lethality in cancer from text","publication_year":2015,"publication_date":"2015-10-01","ids":{"openalex":"https://openalex.org/W2229453122","doi":"https://doi.org/10.1093/bioinformatics/btv570","mag":"2229453122","pmid":"https://pubmed.ncbi.nlm.nih.gov/26428294"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv570","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv570","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/276/6690131/btv570.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/276/6690131/btv570.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000080545","display_name":"Suwisa Kaewphan","orcid":"https://orcid.org/0000-0001-8534-1215"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Suwisa Kaewphan","raw_affiliation_strings":["1 Turku Centre for Computer Science (TUCS), 20520 Turku, Finland,","2 Department of Information Technology, University of Turku, 20014, Finland,","3 University of Turku Graduate School (UTUGS), University of Turku, 20014, Finland,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Turku Centre for Computer Science (TUCS), 20520 Turku, Finland,","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"2 Department of Information Technology, University of Turku, 20014, Finland,","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"3 University of Turku Graduate School (UTUGS), University of Turku, 20014, Finland,","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046446401","display_name":"Sofie Van Landeghem","orcid":null},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sofie Van Landeghem","raw_affiliation_strings":["4 Department of Plant Systems Biology, VIB, Ghent 9000, Belgium,","5 Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Department of Plant Systems Biology, VIB, Ghent 9000, Belgium,","institution_ids":["https://openalex.org/I4210098178"]},{"raw_affiliation_string":"5 Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium,","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007825608","display_name":"Tomoko Ohta","orcid":"https://orcid.org/0000-0002-9418-8352"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tomoko Ohta","raw_affiliation_strings":["6 Textimi, Tokyo, Japan,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"6 Textimi, Tokyo, Japan,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070738091","display_name":"Yves Van de Peer","orcid":"https://orcid.org/0000-0003-4327-3730"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["BE","ZA"],"is_corresponding":false,"raw_author_name":"Yves Van de Peer","raw_affiliation_strings":["4 Department of Plant Systems Biology, VIB, Ghent 9000, Belgium,","5 Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium,","7 Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium,","8 Genomics Research Institute, University of Pretoria, Pretoria, South Africa and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Department of Plant Systems Biology, VIB, Ghent 9000, Belgium,","institution_ids":["https://openalex.org/I4210098178"]},{"raw_affiliation_string":"5 Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"7 Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"8 Genomics Research Institute, University of Pretoria, Pretoria, South Africa and","institution_ids":["https://openalex.org/I69552723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019929457","display_name":"Filip Ginter","orcid":"https://orcid.org/0000-0002-5484-6103"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Filip Ginter","raw_affiliation_strings":["2 Department of Information Technology, University of Turku, 20014, Finland,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Information Technology, University of Turku, 20014, Finland,","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066925770","display_name":"Sampo Pyysalo","orcid":"https://orcid.org/0000-0002-6279-5000"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Sampo Pyysalo","raw_affiliation_strings":["2 Department of Information Technology, University of Turku, 20014, Finland,","9 Language Technology Lab (LTL), University of Cambridge, Cambridge CB3 9DA, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Information Technology, University of Turku, 20014, Finland,","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"9 Language Technology Lab (LTL), University of Cambridge, Cambridge CB3 9DA, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5000080545"],"corresponding_institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.6526,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.83994322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"32","issue":"2","first_page":"276","last_page":"282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6904000043869019,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6904000043869019,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.037700001150369644,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0340999998152256,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8109793663024902},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6751139760017395},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6671789884567261},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6661062240600586},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5984969139099121},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5789185762405396},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5720217823982239},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.516279399394989},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.4817219078540802},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.4661817252635956},{"id":"https://openalex.org/keywords/unique-identifier","display_name":"Unique identifier","score":0.4526006579399109},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.4373306334018707},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3924102783203125},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09062987565994263},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07177004218101501}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8109793663024902},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6751139760017395},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6671789884567261},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6661062240600586},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5984969139099121},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5789185762405396},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5720217823982239},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.516279399394989},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.4817219078540802},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.4661817252635956},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.4526006579399109},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.4373306334018707},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3924102783203125},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09062987565994263},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07177004218101501},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005804","descriptor_name":"Genes, Lethal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005804","descriptor_name":"Genes, Lethal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005804","descriptor_name":"Genes, Lethal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005804","descriptor_name":"Genes, Lethal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btv570","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv570","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/276/6690131/btv570.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26428294","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26428294","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:7081746","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-7081746","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/2/276","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/2/276","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4708107","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4708107","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.up.ac.za:2263/51469","is_oa":true,"landing_page_url":"http://hdl.handle.net/2263/51469","pdf_url":null,"source":{"id":"https://openalex.org/S4306401870","display_name":"UpSpace Institutional Repository (University of Pretoria)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I69552723","host_organization_name":"University of Pretoria","host_organization_lineage":["https://openalex.org/I69552723"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv570","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv570","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/276/6690131/btv570.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310086","display_name":"Helsingin Yliopisto","ror":"https://ror.org/040af2s02"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2229453122.pdf","grobid_xml":"https://content.openalex.org/works/W2229453122.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W192665053","https://openalex.org/W1679133234","https://openalex.org/W1830777114","https://openalex.org/W1859283887","https://openalex.org/W1973406306","https://openalex.org/W1989773675","https://openalex.org/W2021331223","https://openalex.org/W2037831873","https://openalex.org/W2043398720","https://openalex.org/W2047782770","https://openalex.org/W2048059249","https://openalex.org/W2051718393","https://openalex.org/W2063753566","https://openalex.org/W2065963191","https://openalex.org/W2098740402","https://openalex.org/W2114361266","https://openalex.org/W2121844933","https://openalex.org/W2122496897","https://openalex.org/W2125765581","https://openalex.org/W2134488721","https://openalex.org/W2147880316","https://openalex.org/W2163107094","https://openalex.org/W2169918010","https://openalex.org/W2179494026","https://openalex.org/W2251279337","https://openalex.org/W2251431888","https://openalex.org/W2394597347","https://openalex.org/W6600347082","https://openalex.org/W6638641193","https://openalex.org/W6639190232","https://openalex.org/W6643314856","https://openalex.org/W6666653946","https://openalex.org/W6682082992","https://openalex.org/W6685627216","https://openalex.org/W6691331089","https://openalex.org/W6712116042"],"related_works":["https://openalex.org/W2793132289","https://openalex.org/W2413568490","https://openalex.org/W1913624564","https://openalex.org/W3130054399","https://openalex.org/W4301062032","https://openalex.org/W2343500026","https://openalex.org/W2319837024","https://openalex.org/W2390627310","https://openalex.org/W2413664130","https://openalex.org/W2051731675"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,163,220],"recognition":[2,78],"and":[3,56,84,122,154,176,232],"normalization":[4],"of":[5,25,104,159,168,174,201,235],"cell":[6,41,75,115,160,205,213,225],"line":[7,42,76,116,161,206,214,226],"names":[8],"in":[9,15,54,198],"text":[10,17,110],"is":[11,45,136],"an":[12,166],"important":[13],"task":[14],"biomedical":[16],"mining":[18],"research,":[19],"facilitating":[20],"for":[21,114],"instance":[22],"the":[23,30,66,74,118,133,151,171,179,199,224,233,236],"identification":[24,200],"synthetically":[26,62],"lethal":[27,63],"genes":[28,64],"from":[29,65],"literature.":[31,68],"While":[32],"several":[33],"tools":[34],"have":[35],"previously":[36],"been":[37],"developed":[38],"to":[39,91,98,191,209],"address":[40],"recognition,":[43],"it":[44],"unclear":[46],"whether":[47],"available":[48,82,243],"systems":[49,83],"can":[50],"perform":[51],"sufficiently":[52],"well":[53],"realistic":[55],"broad-coverage":[57,119],"applications":[58],"such":[59],"as":[60],"extracting":[61],"cancer":[67],"In":[69,102],"this":[70,105],"study,":[71],"we":[72,107],"revisit":[73],"name":[77],"task,":[79,106],"evaluating":[80],"both":[81],"newly":[85],"introduced":[86],"methods":[87],"on":[88,145,150,170,178,239],"various":[89],"resources":[90],"obtain":[92],"a":[93,124,140,157],"reliable":[94],"tagger":[95],"not":[96],"tied":[97],"any":[99],"specific":[100],"subdomain.":[101],"support":[103],"introduce":[108],"two":[109],"collections":[111],"manually":[112,221],"annotated":[113,181,222],"names:":[117],"corpus":[120,153],"Gellus":[121,152,175],"CLL,":[123],"focused":[125],"target":[126],"domain":[127],"corpus.":[128,183],"RESULTS:":[129],"We":[130],"find":[131],"that":[132],"best":[134],"performance":[135],"achieved":[137],"using":[138],"NERsuite,":[139],"machine":[141],"learning":[142],"system":[143,164],"based":[144],"Conditional":[146],"Random":[147],"Fields,":[148],"trained":[149],"supported":[155],"with":[156],"dictionary":[158],"names.":[162],"achieves":[165],"F-score":[167],"88.46%":[169],"test":[172],"set":[173],"85.98%":[177],"independently":[180],"CLL":[182],"It":[184],"was":[185],"further":[186],"applied":[187],"at":[188,247],"large":[189],"scale":[190],"24":[192],"302":[193],"102":[194],"unannotated":[195,240],"articles,":[196],"resulting":[197],"5":[202],"181":[203],"342":[204],"mentions,":[207],"normalized":[208],"11":[210],"755":[211],"unique":[212],"database":[215],"identifiers.":[216],"AVAILABILITY":[217],"AND":[218],"IMPLEMENTATION:":[219],"datasets,":[223],"dictionary,":[227],"derived":[228],"corpora,":[229],"NERsuite":[230],"models":[231],"results":[234],"large-scale":[237],"run":[238],"texts":[241],"are":[242],"under":[244],"open":[245],"licenses":[246],"http://turkunlp.github.io/Cell-line-recognition/.":[248],"CONTACT:":[249],"sukaew@utu.fi.":[250]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":3}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
