{"id":"https://openalex.org/W2174227355","doi":"https://doi.org/10.1093/bioinformatics/btv540","title":"NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles","display_name":"NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles","publication_year":2015,"publication_date":"2015-09-17","ids":{"openalex":"https://openalex.org/W2174227355","doi":"https://doi.org/10.1093/bioinformatics/btv540","mag":"2174227355","pmid":"https://pubmed.ncbi.nlm.nih.gov/26382197"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv540","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv540","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/142/49016317/bioinformatics_32_1_142.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/142/49016317/bioinformatics_32_1_142.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042512071","display_name":"Richard M. Leggett","orcid":"https://orcid.org/0000-0003-3044-4297"},"institutions":[{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Richard M. Leggett","raw_affiliation_strings":["The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK","institution_ids":["https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089160163","display_name":"Darren Heavens","orcid":"https://orcid.org/0000-0001-5418-7868"},"institutions":[{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Darren Heavens","raw_affiliation_strings":["The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK","institution_ids":["https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044372059","display_name":"Mario C\u00e1ccamo","orcid":"https://orcid.org/0000-0002-6244-3048"},"institutions":[{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mario Caccamo","raw_affiliation_strings":["The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK","institution_ids":["https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100643965","display_name":"Matthew D. Clark","orcid":"https://orcid.org/0000-0002-8049-5423"},"institutions":[{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew D. Clark","raw_affiliation_strings":["The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK","institution_ids":["https://openalex.org/I4210100714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025528976","display_name":"Robert Davey","orcid":"https://orcid.org/0000-0002-5589-7754"},"institutions":[{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert P. Davey","raw_affiliation_strings":["The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Analysis Centre (TGAC), Norwich NR4 7UH, UK","institution_ids":["https://openalex.org/I4210100714"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5042512071"],"corresponding_institution_ids":["https://openalex.org/I4210100714"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.5828,"has_fulltext":true,"cited_by_count":66,"citation_normalized_percentile":{"value":0.93737373,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"32","issue":"1","first_page":"142","last_page":"144"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7773000001907349,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7773000001907349,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.04910000041127205,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.03759999945759773,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/minion","display_name":"Minion","score":0.9796580076217651},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.8073242902755737},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7998522520065308},{"id":"https://openalex.org/keywords/mac-os","display_name":"Mac OS","score":0.6947526335716248},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6848299503326416},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5706778764724731},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5477175712585449},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5393706560134888},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.5325986742973328},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5156654119491577},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4691808521747589},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4650840163230896},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4532169699668884},{"id":"https://openalex.org/keywords/usb","display_name":"USB","score":0.42020687460899353},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.4180302023887634},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.4129739999771118},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.38526490330696106},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1917392611503601}],"concepts":[{"id":"https://openalex.org/C2779927696","wikidata":"https://www.wikidata.org/wiki/Q6865654","display_name":"Minion","level":5,"score":0.9796580076217651},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.8073242902755737},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7998522520065308},{"id":"https://openalex.org/C522133331","wikidata":"https://www.wikidata.org/wiki/Q43627","display_name":"Mac OS","level":3,"score":0.6947526335716248},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6848299503326416},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5706778764724731},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5477175712585449},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5393706560134888},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.5325986742973328},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5156654119491577},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4691808521747589},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4650840163230896},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4532169699668884},{"id":"https://openalex.org/C507366226","wikidata":"https://www.wikidata.org/wiki/Q42378","display_name":"USB","level":3,"score":0.42020687460899353},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.4180302023887634},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.4129739999771118},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.38526490330696106},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1917392611503601},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv540","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv540","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/142/49016317/bioinformatics_32_1_142.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26382197","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26382197","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4681994","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4681994","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv540","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv540","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/142/49016317/bioinformatics_32_1_142.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4739996220","display_name":"TGAC ISPG - Developing Strategies for Big Data Bioinformatics","funder_award_id":"BBS/E/T/000PR5885","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5298790525","display_name":null,"funder_award_id":"BB/J010375/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5413484791","display_name":null,"funder_award_id":"BBS/E/T/000PR5885","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5693107050","display_name":"TGAC NCG: National Genomics Facility","funder_award_id":"BBS/E/T/000PR6193","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6123500221","display_name":null,"funder_award_id":"BBS/E/T/000PR6193","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2174227355.pdf","grobid_xml":"https://content.openalex.org/works/W2174227355.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2007772656","https://openalex.org/W2095680943","https://openalex.org/W2137759177","https://openalex.org/W2141040548","https://openalex.org/W2162758337","https://openalex.org/W2169131332","https://openalex.org/W4394666350","https://openalex.org/W6674561012"],"related_works":["https://openalex.org/W2749851556","https://openalex.org/W2765793069","https://openalex.org/W4200050032","https://openalex.org/W2550586733","https://openalex.org/W2515795842","https://openalex.org/W1855401909","https://openalex.org/W3138936383","https://openalex.org/W2324462508","https://openalex.org/W2950902115","https://openalex.org/W2174227355"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1],"Oxford":[2],"Nanopore":[3,109],"MinION":[4,12,36],"sequencer,":[5],"currently":[6],"in":[7,19,130,164],"pre-release":[8],"testing":[9],"through":[10],"the":[11,35,67,71,159],"Access":[13],"Programme":[14],"(MAP),":[15],"promises":[16],"long":[17],"reads":[18],"real-time":[20],"from":[21,34,150,169,177],"an":[22,84,126],"inexpensive,":[23],"compact,":[24],"USB":[25],"device.":[26],"Tools":[27],"have":[28],"been":[29,138],"released":[30],"to":[31,41,52,118],"extract":[32],"FASTA/Q":[33],"base":[37],"calling":[38],"output":[39,82],"and":[40,58,80,93,113,142,146,158],"provide":[42,53],"basic":[43],"yield":[44,94],"statistics.":[45],"However,":[46],"no":[47],"single":[48],"tool":[49],"yet":[50],"exists":[51],"comprehensive":[54],"alignment-based":[55],"quality":[56,92],"control":[57],"error":[59,90],"profile":[60],"analysis--something":[61],"that":[62],"is":[63,73,97,115,125,167,174],"extremely":[64],"important":[65],"given":[66],"speed":[68],"with":[69,132],"which":[70],"platform":[72],"evolving.":[74],"RESULTS:":[75],"NanoOK":[76,96,124],"generates":[77],"detailed":[78,100],"tabular":[79],"graphical":[81],"plus":[83],"in-depth":[85],"multi-page":[86],"PDF":[87],"report":[88],"including":[89],"profile,":[91],"data.":[95],"multi-reference,":[98],"enabling":[99],"analysis":[101],"of":[102],"metagenomic":[103],"or":[104],"multiplexed":[105],"samples.":[106],"Four":[107],"popular":[108],"aligners":[110],"are":[111,189],"supported":[112],"it":[114],"easily":[116],"extensible":[117],"include":[119],"others.":[120],"AVAILABILITY":[121],"AND":[122],"IMPLEMENTATION:":[123],"open-source":[127],"software,":[128],"implemented":[129],"Java":[131],"supporting":[133],"R":[134],"scripts.":[135],"It":[136],"has":[137],"tested":[139],"on":[140],"Linux":[141],"Mac":[143],"OS":[144],"X":[145],"can":[147],"be":[148],"downloaded":[149],"https://github.com/TGAC/NanoOK.":[151],"A":[152,171],"VirtualBox":[153],"VM":[154],"containing":[155],"all":[156],"dependencies":[157],"DH10B":[160],"read":[161],"set":[162],"used":[163],"this":[165],"article":[166],"available":[168,176,190],"http://opendata.tgac.ac.uk/nanook/.":[170],"Docker":[172,178],"image":[173],"also":[175],"Hub--see":[179],"program":[180],"documentation":[181],"https://documentation.tgac.ac.uk/display/NANOOK.":[182],"CONTACT:":[183],"richard.leggett@tgac.ac.uk":[184],"SUPPLEMENTARY":[185],"INFORMATION:":[186],"Supplementary":[187],"data":[188],"at":[191],"Bioinformatics":[192],"online.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
