{"id":"https://openalex.org/W2234480502","doi":"https://doi.org/10.1093/bioinformatics/btv536","title":"Drug-set enrichment analysis: a novel tool to investigate drug mode of action","display_name":"Drug-set enrichment analysis: a novel tool to investigate drug mode of action","publication_year":2015,"publication_date":"2015-09-28","ids":{"openalex":"https://openalex.org/W2234480502","doi":"https://doi.org/10.1093/bioinformatics/btv536","mag":"2234480502","pmid":"https://pubmed.ncbi.nlm.nih.gov/26415724"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv536","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/235/49016276/bioinformatics_32_2_235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/235/49016276/bioinformatics_32_2_235.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080917286","display_name":"Francesco Napolitano","orcid":"https://orcid.org/0000-0002-7782-8506"},"institutions":[{"id":"https://openalex.org/I4210152213","display_name":"Telethon Institute Of Genetics And Medicine","ror":"https://ror.org/04xfdsg27","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152213","https://openalex.org/I4210154366"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Napolitano","raw_affiliation_strings":["1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and","institution_ids":["https://openalex.org/I4210152213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014345656","display_name":"Francesco Sirci","orcid":"https://orcid.org/0000-0002-9957-0358"},"institutions":[{"id":"https://openalex.org/I4210152213","display_name":"Telethon Institute Of Genetics And Medicine","ror":"https://ror.org/04xfdsg27","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152213","https://openalex.org/I4210154366"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Sirci","raw_affiliation_strings":["1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and","institution_ids":["https://openalex.org/I4210152213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061485185","display_name":"Diego Carrella","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152213","display_name":"Telethon Institute Of Genetics And Medicine","ror":"https://ror.org/04xfdsg27","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152213","https://openalex.org/I4210154366"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Diego Carrella","raw_affiliation_strings":["1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and","institution_ids":["https://openalex.org/I4210152213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001896455","display_name":"Diego di Bernardo","orcid":"https://orcid.org/0000-0002-1911-7407"},"institutions":[{"id":"https://openalex.org/I4210152213","display_name":"Telethon Institute Of Genetics And Medicine","ror":"https://ror.org/04xfdsg27","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210152213","https://openalex.org/I4210154366"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Diego di Bernardo","raw_affiliation_strings":["1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and","2 Department of Electrical Engineering and Information Technology, University of Naples Federico II, 80125 Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems and Synthetic Biology Lab, Telethon Institute of Genetics and Medicine (TIGEM), 80078 Pozzuoli (NA), Italy and","institution_ids":["https://openalex.org/I4210152213"]},{"raw_affiliation_string":"2 Department of Electrical Engineering and Information Technology, University of Naples Federico II, 80125 Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001896455"],"corresponding_institution_ids":["https://openalex.org/I4210152213","https://openalex.org/I71267560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.8147,"has_fulltext":true,"cited_by_count":86,"citation_normalized_percentile":{"value":0.95810428,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"32","issue":"2","first_page":"235","last_page":"241"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10665","display_name":"Cystic Fibrosis Research Advances","score":0.2957000136375427,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10665","display_name":"Cystic Fibrosis Research Advances","score":0.2957000136375427,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.2903999984264374,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.18610000610351562,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.8075055480003357},{"id":"https://openalex.org/keywords/drug-action","display_name":"Drug action","score":0.5938013792037964},{"id":"https://openalex.org/keywords/mode-of-action","display_name":"Mode of action","score":0.5526156425476074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5469990372657776},{"id":"https://openalex.org/keywords/action","display_name":"Action (physics)","score":0.47281017899513245},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.3500010371208191},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33545204997062683},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.27203384041786194},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17192226648330688},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1347765028476715}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.8075055480003357},{"id":"https://openalex.org/C86380466","wikidata":"https://www.wikidata.org/wiki/Q5308872","display_name":"Drug action","level":3,"score":0.5938013792037964},{"id":"https://openalex.org/C121587506","wikidata":"https://www.wikidata.org/wiki/Q6888113","display_name":"Mode of action","level":2,"score":0.5526156425476074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5469990372657776},{"id":"https://openalex.org/C2780791683","wikidata":"https://www.wikidata.org/wiki/Q846785","display_name":"Action (physics)","level":2,"score":0.47281017899513245},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.3500010371208191},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33545204997062683},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.27203384041786194},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17192226648330688},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1347765028476715},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019005","descriptor_name":"Cystic Fibrosis Transmembrane Conductance Regulator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019005","descriptor_name":"Cystic Fibrosis Transmembrane Conductance Regulator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019005","descriptor_name":"Cystic Fibrosis Transmembrane Conductance Regulator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019005","descriptor_name":"Cystic Fibrosis Transmembrane Conductance Regulator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv536","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/235/49016276/bioinformatics_32_2_235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26415724","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26415724","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3767180","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4795590","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/2/235","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/2/235","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv536","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/2/235/49016276/bioinformatics_32_2_235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1427919354","display_name":null,"funder_award_id":"TGM11SB1","funder_id":"https://openalex.org/F4320321179","funder_display_name":"Fondazione Telethon"},{"id":"https://openalex.org/G4172477460","display_name":null,"funder_award_id":"GR-2009-1596824","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"}],"funders":[{"id":"https://openalex.org/F4320321179","display_name":"Fondazione Telethon","ror":"https://ror.org/04xraxn18"},{"id":"https://openalex.org/F4320321781","display_name":"Ministero della Salute","ror":"https://ror.org/00789fa95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2234480502.pdf","grobid_xml":"https://content.openalex.org/works/W2234480502.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1963622379","https://openalex.org/W1963869388","https://openalex.org/W1970651561","https://openalex.org/W1970886429","https://openalex.org/W2045949302","https://openalex.org/W2050264979","https://openalex.org/W2088139400","https://openalex.org/W2088748594","https://openalex.org/W2093904931","https://openalex.org/W2094791588","https://openalex.org/W2099905447","https://openalex.org/W2103665811","https://openalex.org/W2116634113","https://openalex.org/W2121604817","https://openalex.org/W2125639616","https://openalex.org/W2130410032","https://openalex.org/W2133873320","https://openalex.org/W2135827569","https://openalex.org/W2148043260","https://openalex.org/W2168002584","https://openalex.org/W2168764383","https://openalex.org/W3106798016","https://openalex.org/W4210996550","https://openalex.org/W4248776558","https://openalex.org/W6830628508","https://openalex.org/W7073761954"],"related_works":["https://openalex.org/W1782647748","https://openalex.org/W4254948725","https://openalex.org/W2596011850","https://openalex.org/W4285170202","https://openalex.org/W2497992324","https://openalex.org/W4289443666","https://openalex.org/W2770752843","https://openalex.org/W2412806641","https://openalex.org/W4213271907","https://openalex.org/W2408117644"],"abstract_inverted_index":{"MOTIVATION:":[0],"Automated":[1],"screening":[2],"approaches":[3],"are":[4,74,182],"able":[5,67,96],"to":[6,68,89,97,103,126,134,142],"rapidly":[7],"identify":[8,69,135],"a":[9,15,53],"set":[10,25],"of":[11,26,41,78,92],"small":[12],"molecules":[13,28],"inducing":[14],"desired":[16],"phenotype":[17,91],"from":[18],"large":[19],"small-molecule":[20],"libraries.":[21],"However,":[22],"the":[23,38,70,79,82,90,107,111,114,118,136],"resulting":[24],"candidate":[27],"is":[29,66,95,165],"usually":[30],"very":[31],"diverse":[32],"pharmacologically,":[33],"thus":[34,101],"little":[35],"insight":[36],"on":[37,60,106],"shared":[39,109,138],"mechanism":[40],"action":[42],"(MoA)":[43],"underlying":[44],"their":[45],"efficacy":[46],"can":[47],"be":[48,143],"gained.":[49],"RESULTS:":[50],"We":[51,116,130],"introduce":[52],"computational":[54],"method":[55,119,164],"(Drug-Set":[56],"Enrichment":[57],"Analysis-DSEA)":[58],"based":[59],"drug-induced":[61],"gene":[62,155],"expression":[63],"profiles,":[64],"which":[65],"molecular":[71],"pathways":[72],"that":[73],"targeted":[75],"by":[76,110,120,139],"most":[77],"drugs":[80,112,140],"in":[81,113,146,157],"set.":[83,115],"By":[84],"diluting":[85],"drug-specific":[86],"effects":[87],"unrelated":[88],"interest,":[93],"DSEA":[94,133],"highlight":[98],"phenotype-specific":[99],"pathways,":[100],"helping":[102],"formulate":[104],"hypotheses":[105],"MoA":[108,137],"validated":[117],"analysing":[121],"five":[122],"different":[123],"drug-sets":[124],"related":[125],"well-known":[127],"pharmacological":[128],"classes.":[129],"then":[131],"applied":[132],"known":[141],"partially":[144],"effective":[145],"rescuing":[147],"mutant":[148],"cystic":[149],"fibrosis":[150],"transmembrane":[151],"conductance":[152],"regulator":[153],"(CFTR)":[154],"function":[156],"Cystic":[158],"Fibrosis.":[159],"AVAILABILITY":[160],"AND":[161],"IMPLEMENTATION:":[162],"The":[163],"implemented":[166],"as":[167],"an":[168],"online":[169],"web":[170],"tool":[171],"publicly":[172],"available":[173,183],"at":[174,184],"http://dsea.tigem.it.":[175],"CONTACT:":[176],"dibernardo@tigem.it":[177],"SUPPLEMENTARY":[178],"INFORMATION:":[179],"Supplementary":[180],"data":[181],"Bioinformatics":[185],"online.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":6}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
