{"id":"https://openalex.org/W2293073211","doi":"https://doi.org/10.1093/bioinformatics/btv514","title":"<i>ICT</i>: isotope correction toolbox","display_name":"<i>ICT</i>: isotope correction toolbox","publication_year":2015,"publication_date":"2015-09-17","ids":{"openalex":"https://openalex.org/W2293073211","doi":"https://doi.org/10.1093/bioinformatics/btv514","mag":"2293073211","pmid":"https://pubmed.ncbi.nlm.nih.gov/26382193"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv514","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv514","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/154/16918868/btv514.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/154/16918868/btv514.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104351663","display_name":"Christian Jungreuthmayer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138243","display_name":"Austrian Centre of Industrial Biotechnology (Austria)","ror":"https://ror.org/03dm7dd93","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210138243"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Christian Jungreuthmayer","raw_affiliation_strings":["1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","2 Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","institution_ids":["https://openalex.org/I4210138243"]},{"raw_affiliation_string":"2 Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria and","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076713788","display_name":"Stefan Neubauer","orcid":"https://orcid.org/0000-0001-9017-5645"},"institutions":[{"id":"https://openalex.org/I4210138243","display_name":"Austrian Centre of Industrial Biotechnology (Austria)","ror":"https://ror.org/03dm7dd93","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210138243"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Stefan Neubauer","raw_affiliation_strings":["1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","3 Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","institution_ids":["https://openalex.org/I4210138243"]},{"raw_affiliation_string":"3 Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041718604","display_name":"Teresa Mairinger","orcid":"https://orcid.org/0000-0001-7809-1529"},"institutions":[{"id":"https://openalex.org/I4210138243","display_name":"Austrian Centre of Industrial Biotechnology (Austria)","ror":"https://ror.org/03dm7dd93","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210138243"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Teresa Mairinger","raw_affiliation_strings":["1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","3 Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","institution_ids":["https://openalex.org/I4210138243"]},{"raw_affiliation_string":"3 Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053663717","display_name":"J\u00fcrgen Zanghellini","orcid":"https://orcid.org/0000-0002-1964-2455"},"institutions":[{"id":"https://openalex.org/I4210138243","display_name":"Austrian Centre of Industrial Biotechnology (Austria)","ror":"https://ror.org/03dm7dd93","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210138243"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"J\u00fcrgen Zanghellini","raw_affiliation_strings":["1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","2 Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","institution_ids":["https://openalex.org/I4210138243"]},{"raw_affiliation_string":"2 Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria and","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015735297","display_name":"Stephan Hann","orcid":"https://orcid.org/0000-0001-5045-7293"},"institutions":[{"id":"https://openalex.org/I4210138243","display_name":"Austrian Centre of Industrial Biotechnology (Austria)","ror":"https://ror.org/03dm7dd93","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210138243"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Stephan Hann","raw_affiliation_strings":["1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","3 Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Austrian Centre of Industrial Biotechnology (ACIB), Vienna, Austria,","institution_ids":["https://openalex.org/I4210138243"]},{"raw_affiliation_string":"3 Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053663717","https://openalex.org/A5104351663"],"corresponding_institution_ids":["https://openalex.org/I4210138243","https://openalex.org/I92869138"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6563,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.84278103,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"32","issue":"1","first_page":"154","last_page":"156"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.27810001373291016,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.27810001373291016,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12073","display_name":"Isotope Analysis in Ecology","score":0.1581999957561493,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.07029999792575836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.7797306180000305},{"id":"https://openalex.org/keywords/isotopomers","display_name":"Isotopomers","score":0.7464843988418579},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7238500118255615},{"id":"https://openalex.org/keywords/isotope","display_name":"Isotope","score":0.5942298173904419},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47240012884140015},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.46437373757362366},{"id":"https://openalex.org/keywords/stable-isotope-ratio","display_name":"Stable isotope ratio","score":0.46036943793296814},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4394409954547882},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.42719998955726624},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3476299047470093},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2833319306373596},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18943467736244202},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.143733412027359},{"id":"https://openalex.org/keywords/nuclear-physics","display_name":"Nuclear physics","score":0.13748109340667725},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.08113035559654236}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.7797306180000305},{"id":"https://openalex.org/C127124265","wikidata":"https://www.wikidata.org/wiki/Q2100870","display_name":"Isotopomers","level":3,"score":0.7464843988418579},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7238500118255615},{"id":"https://openalex.org/C164304813","wikidata":"https://www.wikidata.org/wiki/Q25276","display_name":"Isotope","level":2,"score":0.5942298173904419},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47240012884140015},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.46437373757362366},{"id":"https://openalex.org/C22117777","wikidata":"https://www.wikidata.org/wiki/Q17148629","display_name":"Stable isotope ratio","level":2,"score":0.46036943793296814},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4394409954547882},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.42719998955726624},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3476299047470093},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2833319306373596},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18943467736244202},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.143733412027359},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.13748109340667725},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.08113035559654236},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007553","descriptor_name":"Isotope Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007553","descriptor_name":"Isotope Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007553","descriptor_name":"Isotope Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btv514","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv514","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/154/16918868/btv514.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26382193","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26382193","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv514","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv514","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/154/16918868/btv514.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1971645053","https://openalex.org/W1992474783","https://openalex.org/W2013116502","https://openalex.org/W2021441279","https://openalex.org/W2028655734","https://openalex.org/W2076885371","https://openalex.org/W2158676604","https://openalex.org/W2316274763"],"related_works":["https://openalex.org/W2021441279","https://openalex.org/W4288461339","https://openalex.org/W2173687180","https://openalex.org/W1960125006","https://openalex.org/W1972358546","https://openalex.org/W2951666769","https://openalex.org/W2971228209","https://openalex.org/W2154586169","https://openalex.org/W2021486066","https://openalex.org/W3134662495"],"abstract_inverted_index":{"SUMMARY:":[0],"Isotope":[1,107],"tracer":[2],"experiments":[3,20],"are":[4,21,75,158],"an":[5,54],"invaluable":[6],"technique":[7],"to":[8],"analyze":[9],"and":[10,52,134],"study":[11],"the":[12,113,141,145],"metabolism":[13],"of":[14,37,41,57],"biological":[15],"systems.":[16],"However,":[17],"isotope":[18,91],"labeling":[19],"often":[22],"affected":[23],"by":[24],"naturally":[25],"abundant":[26],"isotopes":[27],"especially":[28],"in":[29,112],"cases":[30],"where":[31],"mass":[32,86,99,104],"spectrometric":[33],"methods":[34],"make":[35],"use":[36],"derivatization.":[38],"The":[39],"correction":[40,74,92,108],"these":[42],"additive":[43],"interferences--in":[44],"particular":[45],"for":[46,71],"complex":[47,69],"isotopic":[48,72],"systems--is":[49],"numerically":[50],"challenging":[51],"still":[53],"emerging":[55],"field":[56],"research.":[58],"When":[59],"positional":[60],"information":[61],"is":[62,110],"generated":[63],"via":[64],"collision-induced":[65],"dissociation,":[66],"even":[67],"more":[68],"calculations":[70],"interference":[73],"necessary.":[76],"So":[77],"far,":[78],"no":[79],"freely":[80,138],"available":[81,126,159],"tools":[82],"can":[83,120,136],"handle":[84],"tandem":[85,98,103],"spectrometry":[87,105],"data.":[88],"We":[89],"present":[90],"toolbox,":[93],"a":[94],"program":[95],"that":[96],"corrects":[97],"isotopomer":[100],"data":[101,157],"from":[102],"experiments.":[106],"toolbox":[109],"written":[111],"multi-platform":[114],"programming":[115],"language":[116],"Perl":[117],"and,":[118],"therefore,":[119],"be":[121,137],"used":[122],"on":[123],"all":[124],"commonly":[125],"computer":[127],"platforms.":[128],"AVAILABILITY":[129],"AND":[130],"IMPLEMENTATION:":[131],"Source":[132],"code":[133],"documentation":[135],"obtained":[139],"under":[140],"Artistic":[142],"License":[143,149],"or":[144],"GNU":[146],"General":[147],"Public":[148],"from:":[150],"https://github.com/jungreuc/isotope_correction_toolbox/":[151],"CONTACT:":[152],"{christian.jungreuthmayer@boku.ac.at,juergen.zanghellini@boku.ac.at}":[153],"SUPPLEMENTARY":[154],"INFORMATION:":[155],"Supplementary":[156],"at":[160],"Bioinformatics":[161],"online.":[162]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2016-06-24T00:00:00"}
