{"id":"https://openalex.org/W1904861952","doi":"https://doi.org/10.1093/bioinformatics/btv506","title":"BigBWA: approaching the Burrows\u2013Wheeler aligner to Big Data technologies","display_name":"BigBWA: approaching the Burrows\u2013Wheeler aligner to Big Data technologies","publication_year":2015,"publication_date":"2015-08-30","ids":{"openalex":"https://openalex.org/W1904861952","doi":"https://doi.org/10.1093/bioinformatics/btv506","mag":"1904861952","pmid":"https://pubmed.ncbi.nlm.nih.gov/26323715"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv506","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv506","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/24/4003/50307144/bioinformatics_31_24_4003.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/24/4003/50307144/bioinformatics_31_24_4003.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041366936","display_name":"Jos\u00e9 M. Abu\u00edn","orcid":"https://orcid.org/0000-0001-9771-818X"},"institutions":[{"id":"https://openalex.org/I200284239","display_name":"Universidade de Santiago de Compostela","ror":"https://ror.org/030eybx10","country_code":"ES","type":"education","lineage":["https://openalex.org/I200284239"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 M. Abu\u00edn","raw_affiliation_strings":["1 CITIUS, Universidade de Santiago de Compostela, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 CITIUS, Universidade de Santiago de Compostela, Spain and","institution_ids":["https://openalex.org/I200284239"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007913294","display_name":"Juan C. Pichel","orcid":"https://orcid.org/0000-0001-9505-6493"},"institutions":[{"id":"https://openalex.org/I200284239","display_name":"Universidade de Santiago de Compostela","ror":"https://ror.org/030eybx10","country_code":"ES","type":"education","lineage":["https://openalex.org/I200284239"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan C. Pichel","raw_affiliation_strings":["1 CITIUS, Universidade de Santiago de Compostela, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 CITIUS, Universidade de Santiago de Compostela, Spain and","institution_ids":["https://openalex.org/I200284239"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084306280","display_name":"Tom\u00e1s F. Pena","orcid":"https://orcid.org/0000-0002-7622-4698"},"institutions":[{"id":"https://openalex.org/I200284239","display_name":"Universidade de Santiago de Compostela","ror":"https://ror.org/030eybx10","country_code":"ES","type":"education","lineage":["https://openalex.org/I200284239"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Tom\u00e1s F. Pena","raw_affiliation_strings":["1 CITIUS, Universidade de Santiago de Compostela, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 CITIUS, Universidade de Santiago de Compostela, Spain and","institution_ids":["https://openalex.org/I200284239"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069190834","display_name":"Jorge Amigo","orcid":"https://orcid.org/0000-0002-1362-2605"},"institutions":[{"id":"https://openalex.org/I200284239","display_name":"Universidade de Santiago de Compostela","ror":"https://ror.org/030eybx10","country_code":"ES","type":"education","lineage":["https://openalex.org/I200284239"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jorge Amigo","raw_affiliation_strings":["2 Genomics Medicine Group (GMX), Universidade de Santiago de Compostela, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Genomics Medicine Group (GMX), Universidade de Santiago de Compostela, Spain","institution_ids":["https://openalex.org/I200284239"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5041366936"],"corresponding_institution_ids":["https://openalex.org/I200284239"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.4339,"has_fulltext":true,"cited_by_count":155,"citation_normalized_percentile":{"value":0.95134619,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"24","first_page":"4003","last_page":"4005"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8555289506912231},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.6727219223976135},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6558607816696167},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5504282712936401},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4951108992099762},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4781407117843628},{"id":"https://openalex.org/keywords/fault-tolerance","display_name":"Fault tolerance","score":0.44734877347946167},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4376484155654907},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4119695723056793}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8555289506912231},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.6727219223976135},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6558607816696167},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5504282712936401},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4951108992099762},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4781407117843628},{"id":"https://openalex.org/C63540848","wikidata":"https://www.wikidata.org/wiki/Q3140932","display_name":"Fault tolerance","level":2,"score":0.44734877347946167},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4376484155654907},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4119695723056793},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv506","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv506","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/24/4003/50307144/bioinformatics_31_24_4003.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26323715","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26323715","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/24/4003","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/24/4003","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv506","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv506","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/24/4003/50307144/bioinformatics_31_24_4003.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1904861952.pdf","grobid_xml":"https://content.openalex.org/works/W1904861952.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1560840983","https://openalex.org/W2031634592","https://openalex.org/W2095680943","https://openalex.org/W2103441770","https://openalex.org/W2141978878","https://openalex.org/W2171777347","https://openalex.org/W2173213060","https://openalex.org/W2297835331","https://openalex.org/W2885727518","https://openalex.org/W4247053599","https://openalex.org/W4394666350","https://openalex.org/W6674561012","https://openalex.org/W6697360534"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W4206777497","https://openalex.org/W4233347783","https://openalex.org/W2910064364","https://openalex.org/W4255224757","https://openalex.org/W3081644756"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"BigBWA":[2,37,57],"is":[3,38,58],"a":[4],"new":[5],"tool":[6],"that":[7],"uses":[8],"the":[9,16,19,26,49,61],"Big":[10],"Data":[11],"technology":[12],"Hadoop":[13],"to":[14],"boost":[15],"performance":[17],"of":[18,48],"Burrows\u2013Wheeler":[20],"aligner":[21],"(BWA).":[22],"Important":[23],"reductions":[24],"in":[25],"execution":[27],"times":[28],"were":[29],"observed":[30],"when":[31],"using":[32],"this":[33],"tool.":[34],"In":[35],"addition,":[36],"fault":[39],"tolerant":[40],"and":[41,55],"it":[42],"does":[43],"not":[44],"require":[45],"any":[46],"modification":[47],"original":[50],"BWA":[51],"source":[52],"code.":[53],"Availability":[54],"implementation:":[56],"available":[59,73],"at":[60,74],"project":[62],"GitHub":[63],"repository:":[64],"https://github.com/citiususc/BigBWA":[65],"Contact:":[66],"josemanuel.abuin@usc.es":[67],"Supplementary":[68,70],"information:":[69],"data":[71],"are":[72],"Bioinformatics":[75],"online.":[76]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":7}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
