{"id":"https://openalex.org/W1771331356","doi":"https://doi.org/10.1093/bioinformatics/btv495","title":"H<scp>ap</scp>C<scp>ol</scp>: accurate and memory-efficient haplotype assembly from long reads","display_name":"H<scp>ap</scp>C<scp>ol</scp>: accurate and memory-efficient haplotype assembly from long reads","publication_year":2015,"publication_date":"2015-08-26","ids":{"openalex":"https://openalex.org/W1771331356","doi":"https://doi.org/10.1093/bioinformatics/btv495","mag":"1771331356","pmid":"https://pubmed.ncbi.nlm.nih.gov/26315913"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1610/22644572/btv495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1610/22644572/btv495.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079127373","display_name":"Yuri Pirola","orcid":"https://orcid.org/0000-0002-8479-7592"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Yuri Pirola","raw_affiliation_strings":["1 Dipartimento di Informatica Sistemistica e Comunicazione (DISCo), Univ. degli Studi di Milano-Bicocca, Milan, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Dipartimento di Informatica Sistemistica e Comunicazione (DISCo), Univ. degli Studi di Milano-Bicocca, Milan, Italy,","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015317678","display_name":"Simone Zaccaria","orcid":"https://orcid.org/0000-0002-5265-7392"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Simone Zaccaria","raw_affiliation_strings":["1 Dipartimento di Informatica Sistemistica e Comunicazione (DISCo), Univ. degli Studi di Milano-Bicocca, Milan, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Dipartimento di Informatica Sistemistica e Comunicazione (DISCo), Univ. degli Studi di Milano-Bicocca, Milan, Italy,","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110357719","display_name":"Riccardo Dondi","orcid":null},"institutions":[{"id":"https://openalex.org/I11039511","display_name":"University of Bergamo","ror":"https://ror.org/02mbd5571","country_code":"IT","type":"education","lineage":["https://openalex.org/I11039511"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Dondi","raw_affiliation_strings":["2 Dipartimento di Scienze Umane e Sociali, Univ. degli Studi di Bergamo, Bergamo, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Dipartimento di Scienze Umane e Sociali, Univ. degli Studi di Bergamo, Bergamo, Italy,","institution_ids":["https://openalex.org/I11039511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029642674","display_name":"Gunnar W. Klau","orcid":"https://orcid.org/0000-0002-6340-0090"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]}],"countries":["FR","NL"],"is_corresponding":false,"raw_author_name":"Gunnar W. Klau","raw_affiliation_strings":["3 Life Sciences group, Centrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands,","4 ERABLE Team, INRIA, Lyon, France and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Life Sciences group, Centrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands,","institution_ids":["https://openalex.org/I1341640284"]},{"raw_affiliation_string":"4 ERABLE Team, INRIA, Lyon, France and","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081785647","display_name":"Nadia Pisanti","orcid":"https://orcid.org/0000-0003-3915-7665"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR","IT"],"is_corresponding":false,"raw_author_name":"Nadia Pisanti","raw_affiliation_strings":["4 ERABLE Team, INRIA, Lyon, France and","5 Dipartimento di Informatica, Univ. degli Studi di Pisa, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 ERABLE Team, INRIA, Lyon, France and","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"5 Dipartimento di Informatica, Univ. degli Studi di Pisa, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038691764","display_name":"Paola Bonizzoni","orcid":"https://orcid.org/0000-0001-7289-4988"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paola Bonizzoni","raw_affiliation_strings":["1 Dipartimento di Informatica Sistemistica e Comunicazione (DISCo), Univ. degli Studi di Milano-Bicocca, Milan, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Dipartimento di Informatica Sistemistica e Comunicazione (DISCo), Univ. degli Studi di Milano-Bicocca, Milan, Italy,","institution_ids":["https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5015317678","https://openalex.org/A5038691764","https://openalex.org/A5079127373"],"corresponding_institution_ids":["https://openalex.org/I66752286"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.474,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.96005852,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"32","issue":"11","first_page":"1610","last_page":"1617"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.3912000060081482,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.3912000060081482,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.28029999136924744,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.18950000405311584,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.671390175819397},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6292552351951599},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.5217769742012024},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4865385591983795},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4026932716369629},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33130162954330444},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1655510663986206},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16307184100151062}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.671390175819397},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6292552351951599},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.5217769742012024},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4865385591983795},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4026932716369629},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33130162954330444},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1655510663986206},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16307184100151062},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/btv495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1610/22644572/btv495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26315913","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26315913","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:cwi:oai:cwi.nl:23763","is_oa":true,"landing_page_url":"https://ir.cwi.nl/pub/23763","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 1 - 8","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-01225984v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01225984","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2016, &#x27E8;10.1093/bioinformatics/btv495&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:aisberg.unibg.it:10446/78331","is_oa":true,"landing_page_url":"http://hdl.handle.net/10446/78331","pdf_url":null,"source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:arpi.unipi.it:11568/777382","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/777382","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:boa.unimib.it:10281/132162","is_oa":true,"landing_page_url":"https://hdl.handle.net/10281/132162","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:32/11/1610","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/32/11/1610","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:vu:oai:research.vu.nl:publications/7ad53541-17c2-4a07-b7c9-9178ba729827","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/7ad53541-17c2-4a07-b7c9-9178ba729827","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 32(11), 1610 - 1617. Oxford University Press","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/11/1610/22644572/btv495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G7276118644","display_name":null,"funder_award_id":"2010LYA9RH","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G8411802876","display_name":"Modulation of anti-cancer immune response by regulatory non-coding RNAs","funder_award_id":"2013-0955","funder_id":"https://openalex.org/F4320321499","funder_display_name":"Fondazione Cariplo"}],"funders":[{"id":"https://openalex.org/F4320321499","display_name":"Fondazione Cariplo","ror":"https://ror.org/01gb56c55"},{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1771331356.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W134178062","https://openalex.org/W1866835760","https://openalex.org/W1984209370","https://openalex.org/W2003910843","https://openalex.org/W2007772656","https://openalex.org/W2009441527","https://openalex.org/W2022316530","https://openalex.org/W2033837064","https://openalex.org/W2036815225","https://openalex.org/W2041947570","https://openalex.org/W2089070048","https://openalex.org/W2100004318","https://openalex.org/W2110772696","https://openalex.org/W2114299767","https://openalex.org/W2117400776","https://openalex.org/W2120126913","https://openalex.org/W2121729186","https://openalex.org/W2122767081","https://openalex.org/W2129326667","https://openalex.org/W2131016694","https://openalex.org/W2150949792","https://openalex.org/W2164971951","https://openalex.org/W2168133698","https://openalex.org/W2233072870","https://openalex.org/W2342563361","https://openalex.org/W2752061190","https://openalex.org/W2752853835","https://openalex.org/W4231539689"],"related_works":["https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W2378211422","https://openalex.org/W2166354960","https://openalex.org/W2056886854","https://openalex.org/W2025446304","https://openalex.org/W2745001401","https://openalex.org/W2057257086","https://openalex.org/W4321353415","https://openalex.org/W2131321814"],"abstract_inverted_index":{"MOTIVATION:":[0],"Haplotype":[1,31],"assembly":[2,32],"is":[3,14,108,158,220],"the":[4,20,26,36,111,124,136,164,167,196,210,223,226],"computational":[5,191],"problem":[6],"of":[7,15,22,28,38,93,98,114,151,169,198,225],"reconstructing":[8],"haplotypes":[9],"in":[10,62,110],"diploid":[11],"organisms":[12],"and":[13,42,76,121,144,166,208],"fundamental":[16],"importance":[17],"for":[18,116],"characterizing":[19],"effects":[21],"single-nucleotide":[23,118],"polymorphisms":[24],"on":[25,85,142,174],"expression":[27],"phenotypic":[29],"traits.":[30],"highly":[33],"benefits":[34],"from":[35],"advent":[37],"'future-generation'":[39],"sequencing":[40,77,99],"technologies":[41],"their":[43],"capability":[44],"to":[45,57,189,202],"produce":[46],"long":[47],"reads":[48],"at":[49,231,241],"increasing":[50],"coverage.":[51],"Existing":[52],"methods":[53,140],"are":[54,83,239],"not":[55],"able":[56],"deal":[58],"with":[59,135,160,205],"such":[60],"data":[61,238],"a":[63,91,148],"fully":[64],"satisfactory":[65],"way,":[66],"either":[67],"because":[68,81],"accuracy":[69,165],"or":[70,80],"performances":[71],"degrade":[72],"as":[73],"read":[74],"length":[75],"coverage":[78,207],"increase":[79],"they":[82],"based":[84],"restrictive":[86],"assumptions.":[87],"RESULTS:":[88],"By":[89],"exploiting":[90],"feature":[92],"future-generation":[94],"technologies-the":[95],"uniform":[96],"distribution":[97],"errors-we":[100],"designed":[101],"an":[102,130],"exact":[103],"algorithm,":[104],"called":[105],"HapCol,":[106],"that":[107,122,156,179],"exponential":[109],"maximum":[112],"number":[113,168],"corrections":[115],"each":[117],"polymorphism":[119],"position":[120],"minimizes":[123],"overall":[125],"error-correction":[126],"score.":[127],"We":[128],"performed":[129],"experimental":[131],"analysis,":[132],"comparing":[133],"HapCol":[134,157,180,193],"current":[137],"state-of-the-art":[138,161],"combinatorial":[139],"both":[141],"real":[143,152],"simulated":[145,176],"data.":[146],"On":[147],"standard":[149],"benchmark":[150],"data,":[153],"we":[154],"show":[155],"competitive":[159],"methods,":[162],"improving":[163],"phased":[170],"positions.":[171],"Furthermore,":[172],"experiments":[173],"realistically":[175],"datasets":[177,204],"revealed":[178],"requires":[181],"significantly":[182],"less":[183],"computing":[184],"resources,":[185],"especially":[186],"memory.":[187],"Thanks":[188],"its":[190],"efficiency,":[192],"can":[194],"overcome":[195],"limits":[197],"previous":[199],"approaches,":[200],"allowing":[201],"phase":[203],"higher":[206],"without":[209],"traditional":[211],"all-heterozygous":[212],"assumption.":[213],"AVAILABILITY":[214],"AND":[215],"IMPLEMENTATION:":[216],"Our":[217],"source":[218],"code":[219],"available":[221,240],"under":[222],"terms":[224],"GNU":[227],"General":[228],"Public":[229],"License":[230],"http://hapcol.algolab.eu/":[232],"CONTACT:":[233],"bonizzoni@disco.unimib.it":[234],"SUPPLEMENTARY":[235],"INFORMATION:":[236],"Supplementary":[237],"Bioinformatics":[242],"online.":[243]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":9}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2016-06-24T00:00:00"}
