{"id":"https://openalex.org/W2162974932","doi":"https://doi.org/10.1093/bioinformatics/btv481","title":"SeDuS: segmental duplication simulator","display_name":"SeDuS: segmental duplication simulator","publication_year":2015,"publication_date":"2015-09-10","ids":{"openalex":"https://openalex.org/W2162974932","doi":"https://doi.org/10.1093/bioinformatics/btv481","mag":"2162974932","pmid":"https://pubmed.ncbi.nlm.nih.gov/26358728"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/148/49016284/bioinformatics_32_1_148.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/148/49016284/bioinformatics_32_1_148.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024533793","display_name":"Diego A. Hartas\u00e1nchez","orcid":"https://orcid.org/0000-0003-2596-6883"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210135169","display_name":"Institut de Biologia Evolutiva","ror":"https://ror.org/044mj7r89","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I170486558","https://openalex.org/I4210135169"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Diego A. Hartas\u00e1nchez","raw_affiliation_strings":["1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210135169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066189310","display_name":"Marina Bras\u00f3\u2010Vives","orcid":"https://orcid.org/0000-0001-5007-5789"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210135169","display_name":"Institut de Biologia Evolutiva","ror":"https://ror.org/044mj7r89","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I170486558","https://openalex.org/I4210135169"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marina Bras\u00f3-Vives","raw_affiliation_strings":["1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210135169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049888556","display_name":"Juanma Fuentes-D\u00edaz","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210135169","display_name":"Institut de Biologia Evolutiva","ror":"https://ror.org/044mj7r89","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I170486558","https://openalex.org/I4210135169"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juanma Fuentes-D\u00edaz","raw_affiliation_strings":["1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210135169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053239986","display_name":"Oriol Vall\u00e8s-Codina","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210135169","display_name":"Institut de Biologia Evolutiva","ror":"https://ror.org/044mj7r89","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I170486558","https://openalex.org/I4210135169"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oriol Vall\u00e8s-Codina","raw_affiliation_strings":["1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210135169"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058492717","display_name":"Arcadi Navarro","orcid":"https://orcid.org/0000-0003-2162-8246"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210135169","display_name":"Institut de Biologia Evolutiva","ror":"https://ror.org/044mj7r89","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I170486558","https://openalex.org/I4210135169"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["ES","IN"],"is_corresponding":true,"raw_author_name":"Arcadi Navarro","raw_affiliation_strings":["1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,","2 National Institute for Bioinformatics, 08003,","3 Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), 08010 and","4 Centre for Genomic Regulation (CRG), 08003, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Evolutionary Biology (Universitat Pompeu Fabra \u2013 CSIC), PRBB, 08003,","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210135169"]},{"raw_affiliation_string":"2 National Institute for Bioinformatics, 08003,","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"3 Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA), 08010 and","institution_ids":["https://openalex.org/I11932220"]},{"raw_affiliation_string":"4 Centre for Genomic Regulation (CRG), 08003, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5058492717"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I170486558","https://openalex.org/I4210135169","https://openalex.org/I4210137962","https://openalex.org/I4210148697"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.225,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.65514492,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"32","issue":"1","first_page":"148","last_page":"150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.33980000019073486,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.33980000019073486,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2329999953508377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.181099995970726,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.9091531038284302},{"id":"https://openalex.org/keywords/crossover","display_name":"Crossover","score":0.7771472930908203},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7757453322410583},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.7315046191215515},{"id":"https://openalex.org/keywords/interrupt","display_name":"Interrupt","score":0.7077568769454956},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4849700927734375},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4487242102622986},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.41234827041625977},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.26294422149658203},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20622819662094116},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14901024103164673},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.14045676589012146},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.10760772228240967}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.9091531038284302},{"id":"https://openalex.org/C122507166","wikidata":"https://www.wikidata.org/wiki/Q628906","display_name":"Crossover","level":2,"score":0.7771472930908203},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7757453322410583},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.7315046191215515},{"id":"https://openalex.org/C41661131","wikidata":"https://www.wikidata.org/wiki/Q220764","display_name":"Interrupt","level":3,"score":0.7077568769454956},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4849700927734375},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4487242102622986},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.41234827041625977},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.26294422149658203},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20622819662094116},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14901024103164673},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.14045676589012146},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.10760772228240967},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173018170","wikidata":"https://www.wikidata.org/wiki/Q165678","display_name":"Microcontroller","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005785","descriptor_name":"Gene Conversion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005785","descriptor_name":"Gene Conversion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005785","descriptor_name":"Gene Conversion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056916","descriptor_name":"Segmental Duplications, Genomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056916","descriptor_name":"Segmental Duplications, Genomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056916","descriptor_name":"Segmental Duplications, Genomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/148/49016284/bioinformatics_32_1_148.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26358728","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26358728","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/32140","is_oa":false,"landing_page_url":"http://hdl.handle.net/10230/32140","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:digital.csic.es:10261/152571","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/152571","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/32/1/148/49016284/bioinformatics_32_1_148.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5830402311","display_name":null,"funder_award_id":"PT13/0001","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G7244523127","display_name":null,"funder_award_id":"PT13/0001","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8530243685","display_name":null,"funder_award_id":"PT13/0001/0026","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162974932.pdf","grobid_xml":"https://content.openalex.org/works/W2162974932.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2007229691","https://openalex.org/W2059688400","https://openalex.org/W2062524957","https://openalex.org/W2100853534","https://openalex.org/W2128884353","https://openalex.org/W2132174189","https://openalex.org/W2132850128","https://openalex.org/W2135123683","https://openalex.org/W2152969276","https://openalex.org/W2158516394","https://openalex.org/W4229487902"],"related_works":["https://openalex.org/W4288898221","https://openalex.org/W2358308054","https://openalex.org/W2109690896","https://openalex.org/W2169637744","https://openalex.org/W2598672065","https://openalex.org/W3120610872","https://openalex.org/W2169715360","https://openalex.org/W1638297612","https://openalex.org/W2523911541","https://openalex.org/W2624709009"],"abstract_inverted_index":{"SUMMARY:":[0],"SeDuS":[1,24,81],"is":[2,82,131],"the":[3,74],"first":[4],"flexible":[5,56],"and":[6,22,36,55,69,86,105,112,128],"user-friendly":[7],"forward-in-time":[8],"simulator":[9],"of":[10,12,28,66,73,76,125],"patterns":[11],"molecular":[13],"evolution":[14,75],"within":[15],"segmental":[16],"duplications":[17],"undergoing":[18],"interlocus":[19,29],"gene":[20,30],"conversion":[21,31],"crossover.":[23],"introduces":[25],"known":[26],"features":[27],"such":[32,46],"as":[33,47],"biased":[34],"directionality":[35],"dependence":[37],"on":[38],"local":[39],"sequence":[40],"identity.":[41],"Additionally,":[42],"it":[43],"includes":[44],"aspects":[45],"different":[48],"selective":[49],"pressures":[50],"acting":[51],"upon":[52],"copy":[53],"number":[54],"crossover":[57],"distributions.":[58],"A":[59,119],"graphical":[60,96],"user":[61,97],"interface":[62,98],"allows":[63],"fast":[64],"fine-tuning":[65],"relevant":[67],"parameters":[68,127],"straightforward":[70],"real-time":[71],"analysis":[72],"duplicates.":[77],"AVAILABILITY":[78],"AND":[79],"IMPLEMENTATION:":[80],"implemented":[83],"in":[84],"C++":[85],"can":[87],"be":[88],"run":[89],"via":[90],"command":[91],"line":[92],"or":[93],"through":[94],"a":[95,122],"developed":[99],"using":[100],"Qt":[101],"C++.":[102],"Source":[103],"code":[104],"binary":[106],"executables":[107],"for":[108],"Linux,":[109],"OS":[110],"X":[111],"Windows":[113],"are":[114],"freely":[115],"available":[116,132],"at":[117],"www.biologiaevolutiva.org/sedus/.":[118],"tutorial":[120],"with":[121],"detailed":[123],"description":[124],"implementation,":[126],"output":[129],"files":[130],"online.":[133],"CONTACT:":[134],"arcadi.navarro@upf.edu.":[135]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
