{"id":"https://openalex.org/W2138457132","doi":"https://doi.org/10.1093/bioinformatics/btv475","title":"Determining conserved metabolic biomarkers from a million database queries","display_name":"Determining conserved metabolic biomarkers from a million database queries","publication_year":2015,"publication_date":"2015-08-13","ids":{"openalex":"https://openalex.org/W2138457132","doi":"https://doi.org/10.1093/bioinformatics/btv475","mag":"2138457132","pmid":"https://pubmed.ncbi.nlm.nih.gov/26275895"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv475","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3721/49036067/bioinformatics_31_23_3721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3721/49036067/bioinformatics_31_23_3721.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067284329","display_name":"Michael E. Kurczy","orcid":"https://orcid.org/0000-0001-6579-9691"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael E. Kurczy","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077405324","display_name":"Julijana Ivani\u0161evi\u0107","orcid":"https://orcid.org/0000-0001-8267-2705"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julijana Ivanisevic","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006765542","display_name":"Caroline H. Johnson","orcid":"https://orcid.org/0000-0002-5298-1299"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Caroline H. Johnson","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058294756","display_name":"Winnie Uritboonthai","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Winnie Uritboonthai","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005094851","display_name":"Linh Hoang","orcid":"https://orcid.org/0000-0002-0077-8213"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linh Hoang","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042010300","display_name":"Mingliang Fang","orcid":"https://orcid.org/0000-0002-2204-9783"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mingliang Fang","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102787143","display_name":"Matthew R. Hicks","orcid":"https://orcid.org/0000-0003-0354-6685"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Hicks","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051538703","display_name":"Anthony Aldebot","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Aldebot","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062845960","display_name":"Duane Rinehart","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duane Rinehart","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062598806","display_name":"Lisa Mellander","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lisa J. Mellander","raw_affiliation_strings":["2 Department of Physics, University of California San Diego, La Jolla, CA 92093, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Physics, University of California San Diego, La Jolla, CA 92093, USA,","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086398688","display_name":"Ralf Tautenhahn","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ralf Tautenhahn","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027513211","display_name":"Gary J. Patti","orcid":"https://orcid.org/0000-0002-3748-6193"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary J. Patti","raw_affiliation_strings":["3 Department of Chemistry, Washington University in St. Louis, St. Louis, MO 63130, USA,","4 Departments of Genetics and Medicine, Washington University School of Medicine, St. Louis, MO 63130, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Chemistry, Washington University in St. Louis, St. Louis, MO 63130, USA,","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"4 Departments of Genetics and Medicine, Washington University School of Medicine, St. Louis, MO 63130, USA,","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059444973","display_name":"Mary E. Spilker","orcid":"https://orcid.org/0000-0002-1629-3843"},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary E. Spilker","raw_affiliation_strings":["5 Pfizer Worldwide Research and Development, San Diego, CA 92121, USA and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"5 Pfizer Worldwide Research and Development, San Diego, CA 92121, USA and","institution_ids":["https://openalex.org/I180857899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029788731","display_name":"H. Paul Benton","orcid":"https://orcid.org/0000-0002-4248-2269"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Paul Benton","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067311581","display_name":"Gary Siuzdak","orcid":"https://orcid.org/0000-0002-4749-0014"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gary Siuzdak","raw_affiliation_strings":["1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","6 Departments of Chemistry, Molecular and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Scripps Center for Metabolomics, The Scripps Research Institute, La Jolla, CA 92037, USA,","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"6 Departments of Chemistry, Molecular and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5067311581"],"corresponding_institution_ids":["https://openalex.org/I123431417"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.739,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.71705473,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"31","issue":"23","first_page":"3721","last_page":"3724"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.620408296585083},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4535256028175354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36295509338378906},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34536483883857727},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21911555528640747}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.620408296585083},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4535256028175354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36295509338378906},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34536483883857727},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21911555528640747}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv475","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3721/49036067/bioinformatics_31_23_3721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26275895","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26275895","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:4053583","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4836397","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/23/3721","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/23/3721","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv475","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3721/49036067/bioinformatics_31_23_3721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1683374304","display_name":null,"funder_award_id":"GM114368","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7357923138","display_name":null,"funder_award_id":"R01CA170737","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7527500114","display_name":null,"funder_award_id":"R01 GM114368","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138457132.pdf","grobid_xml":"https://content.openalex.org/works/W2138457132.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1919065297","https://openalex.org/W1986288127","https://openalex.org/W1989299822","https://openalex.org/W1997062226","https://openalex.org/W2001143464","https://openalex.org/W2013233148","https://openalex.org/W2014578307","https://openalex.org/W2015466408","https://openalex.org/W2023002358","https://openalex.org/W2043451976","https://openalex.org/W2048294518","https://openalex.org/W2049150240","https://openalex.org/W2053300710","https://openalex.org/W2066538400","https://openalex.org/W2079529928","https://openalex.org/W2080046774","https://openalex.org/W2084375915","https://openalex.org/W2098667036","https://openalex.org/W2115944543","https://openalex.org/W2117239687","https://openalex.org/W2131885284","https://openalex.org/W2135607659","https://openalex.org/W2139737100","https://openalex.org/W2146569590","https://openalex.org/W2150031663","https://openalex.org/W2159901810","https://openalex.org/W2324021033"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"MOTIVATION:":[0],"Metabolite":[1],"databases":[2],"provide":[3],"a":[4,122],"unique":[5],"window":[6],"into":[7,51],"metabolome":[8],"research":[9],"allowing":[10],"the":[11,40,46,61,65,95,107,136],"most":[12,84],"commonly":[13],"searched":[14],"biomarkers":[15,50],"to":[16,126,134],"be":[17,132,147],"catalogued.":[18],"Omic":[19],"scale":[20],"metabolite":[21,69,80,112],"profiling,":[22],"or":[23,53],"metabolomics,":[24],"is":[25,57],"finding":[26],"increased":[27],"utility":[28],"in":[29,36,43,88],"biomarker":[30],"discovery":[31,66],"largely":[32],"driven":[33],"by":[34,149],"improvements":[35],"analytical":[37],"technologies":[38],"and":[39,101,109],"concurrent":[41],"developments":[42],"bioinformatics.":[44],"However,":[45],"successful":[47],"translation":[48],"of":[49,63,67,106,139],"clinical":[52],"biologically":[54],"relevant":[55],"indicators":[56],"limited.":[58],"RESULTS:":[59],"With":[60],"aim":[62],"improving":[64],"translatable":[68],"biomarkers,":[70],"we":[71],"present":[72],"search":[73],"analytics":[74],"for":[75],"over":[76],"one":[77],"million":[78],"METLIN":[79,89,108,145],"database":[81],"queries.":[82],"The":[83],"common":[85,111],"metabolites":[86],"found":[87],"were":[90],"cross-correlated":[91],"against":[92],"XCMS":[93,110],"Online,":[94],"widely":[96],"used":[97,133],"cloud-based":[98],"data":[99,113,130,159],"processing":[100],"pathway":[102],"analysis":[103],"platform.":[104],"Analysis":[105],"has":[114],"two":[115],"primary":[116],"implications:":[117],"these":[118],"metabolites,":[119],"might":[120],"indicate":[121],"conserved":[123],"metabolic":[124],"response":[125],"stressors":[127],"and,":[128],"this":[129],"may":[131],"gauge":[135],"relative":[137],"uniqueness":[138],"potential":[140],"biomarkers.":[141],"AVAILABILITY":[142],"AND":[143],"IMPLEMENTATION:":[144],"can":[146],"accessed":[148],"logging":[150],"on":[151],"to:":[152],"https://metlin.scripps.edu":[153],"CONTACT:":[154],"siuzdak@scripps.edu":[155],"SUPPLEMENTARY":[156],"INFORMATION:":[157],"Supplementary":[158],"are":[160],"available":[161],"at":[162],"Bioinformatics":[163],"online.":[164]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
