{"id":"https://openalex.org/W2160383238","doi":"https://doi.org/10.1093/bioinformatics/btv460","title":"cyNeo4j: connecting Neo4j and Cytoscape","display_name":"cyNeo4j: connecting Neo4j and Cytoscape","publication_year":2015,"publication_date":"2015-08-12","ids":{"openalex":"https://openalex.org/W2160383238","doi":"https://doi.org/10.1093/bioinformatics/btv460","mag":"2160383238","pmid":"https://pubmed.ncbi.nlm.nih.gov/26272981"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3868/49036135/bioinformatics_31_23_3868.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3868/49036135/bioinformatics_31_23_3868.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090511049","display_name":"Georg Summer","orcid":null},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]},{"id":"https://openalex.org/I4210113026","display_name":"Netherlands Organisation for Health Research and Development","ror":"https://ror.org/01yaj9a77","country_code":"NL","type":"funder","lineage":["https://openalex.org/I4210113026"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Georg Summer","raw_affiliation_strings":["1 Center for Heart Failure Research, Cardiovascular Research Institute Maastricht (CARIM), University Hospital Maastricht, Maastricht, The Netherlands,","2 TNO, Zeist, The Netherlands,"],"affiliations":[{"raw_affiliation_string":"1 Center for Heart Failure Research, Cardiovascular Research Institute Maastricht (CARIM), University Hospital Maastricht, Maastricht, The Netherlands,","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"2 TNO, Zeist, The Netherlands,","institution_ids":["https://openalex.org/I4210113026"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036590063","display_name":"Thomas Kelder","orcid":"https://orcid.org/0000-0002-5311-2247"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas Kelder","raw_affiliation_strings":["3 EdgeLeap B.V., Utrecht, The Netherlands and"],"affiliations":[{"raw_affiliation_string":"3 EdgeLeap B.V., Utrecht, The Netherlands and","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057223513","display_name":"Keiichiro Ono","orcid":"https://orcid.org/0000-0003-4042-3748"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keiichiro Ono","raw_affiliation_strings":["4 Department of Medicine, University of California, San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"4 Department of Medicine, University of California, San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042603901","display_name":"Marijana Radonji\u0107","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marijana Radonjic","raw_affiliation_strings":["3 EdgeLeap B.V., Utrecht, The Netherlands and"],"affiliations":[{"raw_affiliation_string":"3 EdgeLeap B.V., Utrecht, The Netherlands and","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065724319","display_name":"St\u00e9phane Heymans","orcid":"https://orcid.org/0000-0001-9477-7803"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Stephane Heymans","raw_affiliation_strings":["1 Center for Heart Failure Research, Cardiovascular Research Institute Maastricht (CARIM), University Hospital Maastricht, Maastricht, The Netherlands,"],"affiliations":[{"raw_affiliation_string":"1 Center for Heart Failure Research, Cardiovascular Research Institute Maastricht (CARIM), University Hospital Maastricht, Maastricht, The Netherlands,","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035266214","display_name":"Barry Demchak","orcid":"https://orcid.org/0000-0001-7065-7786"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry Demchak","raw_affiliation_strings":["4 Department of Medicine, University of California, San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"4 Department of Medicine, University of California, San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5090511049"],"corresponding_institution_ids":["https://openalex.org/I34352273","https://openalex.org/I4210113026"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.9712,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.96668775,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"31","issue":"23","first_page":"3868","last_page":"3869"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9695000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7051655650138855},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.5112402439117432},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42101263999938965},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1245129406452179}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7051655650138855},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.5112402439117432},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42101263999938965},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1245129406452179}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3868/49036135/bioinformatics_31_23_3868.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26272981","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26272981","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/8242476e-ea77-4be8-bb18-cfb3ec94840e","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/8242476e-ea77-4be8-bb18-cfb3ec94840e","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Summer, G, Kelder, T, Ono, K, Radonjic, M, Heymans, S & Demchak, B 2015, 'cyNeo4j: connecting Neo4j and Cytoscape', Bioinformatics, vol. 31, no. 23, pp. 3868-3869. https://doi.org/10.1093/bioinformatics/btv460","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:oai-pmh.tno.nl:42880","is_oa":false,"landing_page_url":"https://resolver.tno.nl/uuid:201cc4f9-0a84-4452-a0c3-69944d70cc71","pdf_url":null,"source":{"id":"https://openalex.org/S7407055233","display_name":"TNO Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 31(23), pp. 3868-3869.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/23/3868","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/23/3868","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4653389","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4653389","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:tudelft.nl:uuid:201cc4f9-0a84-4452-a0c3-69944d70cc71","is_oa":false,"landing_page_url":"http://resolver.tudelft.nl/uuid:201cc4f9-0a84-4452-a0c3-69944d70cc71","pdf_url":null,"source":{"id":"https://openalex.org/S4306402238","display_name":"Repository hosted by TU Delft Library (TU Delft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98358874","host_organization_name":"Delft University of Technology","host_organization_lineage":["https://openalex.org/I98358874"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 23, 31, 3868-3869","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3868/49036135/bioinformatics_31_23_3868.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160383238.pdf","grobid_xml":"https://content.openalex.org/works/W2160383238.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2000860171","https://openalex.org/W2028695285","https://openalex.org/W2096173332","https://openalex.org/W2125910575","https://openalex.org/W2144656637","https://openalex.org/W2159675211"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4287378204","https://openalex.org/W2981957539","https://openalex.org/W47352601","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W631546281","https://openalex.org/W4213354039","https://openalex.org/W2266220644"],"abstract_inverted_index":{"georg.summer@gmail.com.":[0]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
