{"id":"https://openalex.org/W2167987124","doi":"https://doi.org/10.1093/bioinformatics/btv446","title":"ASSIsT: an automatic SNP scoring tool for in- and outbreeding species","display_name":"ASSIsT: an automatic SNP scoring tool for in- and outbreeding species","publication_year":2015,"publication_date":"2015-08-06","ids":{"openalex":"https://openalex.org/W2167987124","doi":"https://doi.org/10.1093/bioinformatics/btv446","mag":"2167987124","pmid":"https://pubmed.ncbi.nlm.nih.gov/26249809"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv446","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv446","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3873/49035879/bioinformatics_31_23_3873.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3873/49035879/bioinformatics_31_23_3873.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080405084","display_name":"Mario Di Guardo","orcid":"https://orcid.org/0000-0003-3339-2007"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]},{"id":"https://openalex.org/I4210090479","display_name":"Graduate School Experimental Plant Sciences","ror":"https://ror.org/00dztkz65","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210090479"]},{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["IT","NL"],"is_corresponding":false,"raw_author_name":"Mario Di Guardo","raw_affiliation_strings":["1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,","2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,","3 Graduate School Experimental Plant Sciences, Wageningen University, 6700 AJ Wageningen, The Netherlands and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,","institution_ids":["https://openalex.org/I103225651"]},{"raw_affiliation_string":"3 Graduate School Experimental Plant Sciences, Wageningen University, 6700 AJ Wageningen, The Netherlands and","institution_ids":["https://openalex.org/I4210090479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088595164","display_name":"Diego Micheletti","orcid":"https://orcid.org/0000-0001-9175-9853"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]},{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["IT","NL"],"is_corresponding":false,"raw_author_name":"Diego Micheletti","raw_affiliation_strings":["1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,","2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035748127","display_name":"Luca Bianco","orcid":"https://orcid.org/0000-0002-0196-8422"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Bianco","raw_affiliation_strings":["2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112202739","display_name":"Herma J. J. Koehorst-van Putten","orcid":null},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Herma J. J. Koehorst-van Putten","raw_affiliation_strings":["1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019741408","display_name":"Sara Longhi","orcid":"https://orcid.org/0000-0003-1086-0883"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sara Longhi","raw_affiliation_strings":["1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064607669","display_name":"Fabrizio Costa","orcid":"https://orcid.org/0000-0003-1416-1078"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fabrizio Costa","raw_affiliation_strings":["2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088542491","display_name":"Mar\u00eda Jos\u00e9 Aranzana","orcid":"https://orcid.org/0000-0002-0240-8021"},"institutions":[{"id":"https://openalex.org/I4210158808","display_name":"Center for Research in Agricultural Genomics","ror":"https://ror.org/04tz2h245","country_code":"ES","type":"facility","lineage":["https://openalex.org/I123044942","https://openalex.org/I157913058","https://openalex.org/I4210100913","https://openalex.org/I4210158808","https://openalex.org/I4387153040","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maria J. Aranzana","raw_affiliation_strings":["4 IRTA, Centre de Recerca en Agrigen\u00f3mica CSIC-IRTA-UAB, Beellaterra (Cerdanyola del Vall\u00e9s), 08193 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 IRTA, Centre de Recerca en Agrigen\u00f3mica CSIC-IRTA-UAB, Beellaterra (Cerdanyola del Vall\u00e9s), 08193 Barcelona, Spain","institution_ids":["https://openalex.org/I4210158808"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008158523","display_name":"Riccardo Velasco","orcid":"https://orcid.org/0000-0002-8760-5031"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Velasco","raw_affiliation_strings":["2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001568754","display_name":"Pere Ar\u00fas","orcid":"https://orcid.org/0000-0003-0939-8038"},"institutions":[{"id":"https://openalex.org/I4210158808","display_name":"Center for Research in Agricultural Genomics","ror":"https://ror.org/04tz2h245","country_code":"ES","type":"facility","lineage":["https://openalex.org/I123044942","https://openalex.org/I157913058","https://openalex.org/I4210100913","https://openalex.org/I4210158808","https://openalex.org/I4387153040","https://openalex.org/I4387153040","https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pere Ar\u00fas","raw_affiliation_strings":["4 IRTA, Centre de Recerca en Agrigen\u00f3mica CSIC-IRTA-UAB, Beellaterra (Cerdanyola del Vall\u00e9s), 08193 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 IRTA, Centre de Recerca en Agrigen\u00f3mica CSIC-IRTA-UAB, Beellaterra (Cerdanyola del Vall\u00e9s), 08193 Barcelona, Spain","institution_ids":["https://openalex.org/I4210158808"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107412437","display_name":"Michela Troggio","orcid":null},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michela Troggio","raw_affiliation_strings":["2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy,","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056492186","display_name":"Eric van de Weg","orcid":"https://orcid.org/0000-0002-9443-5974"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Eric W. van de Weg","raw_affiliation_strings":["1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Wageningen UR Plant Breeding, 6700 AA Wageningen, The Netherlands,","institution_ids":["https://openalex.org/I913481162"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5056492186"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.637,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.95136187,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"31","issue":"23","first_page":"3873","last_page":"3874"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.5120999813079834,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.5120999813079834,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12115","display_name":"Genetic and Environmental Crop Studies","score":0.0949999988079071,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.05119999870657921,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5738433003425598},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.544446587562561},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.44557052850723267},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.44527724385261536},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.4448777735233307},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.44030332565307617},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.429512083530426},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3699704110622406},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3446691632270813},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3324405550956726},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24955525994300842},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.21796876192092896},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20383518934249878},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07894867658615112}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5738433003425598},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.544446587562561},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.44557052850723267},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.44527724385261536},{"id":"https://openalex.org/C163691529","wikidata":"https://www.wikidata.org/wiki/Q7391886","display_name":"SNP genotyping","level":5,"score":0.4448777735233307},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.44030332565307617},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.429512083530426},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3699704110622406},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3446691632270813},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3324405550956726},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24955525994300842},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.21796876192092896},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20383518934249878},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07894867658615112},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/btv446","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv446","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3873/49035879/bioinformatics_31_23_3873.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26249809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26249809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/248074","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/248074","pdf_url":"http://hdl.handle.net/10261/248074","source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:repositori.irta.cat:20.500.12327/3195","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12327/3195","pdf_url":"https://repositori.irta.cat/bitstream/20.500.12327/3195/1/DiGuardo_Assist_2015.pdf","source":{"id":"https://openalex.org/S4306401920","display_name":"IRTA (Institut de Recerca i Tecnologia Agroalimentaries)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210100913","host_organization_name":"Institute of Agrifood Research and Technology","host_organization_lineage":["https://openalex.org/I4210100913"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unitn.it:11572/340922","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/340922","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/23/3873","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/23/3873","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:openpub.fmach.it:10449/32764","is_oa":true,"landing_page_url":"http://hdl.handle.net/10449/32764","pdf_url":null,"source":{"id":"https://openalex.org/S4377196413","display_name":"CINECA IRIS Institutional Research Information System (Fondazione Edmund Mach)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I103225651","host_organization_name":"Fondazione Edmund Mach","host_organization_lineage":["https://openalex.org/I103225651"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4653386","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4653386","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/490050","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/assist-an-automatic-snp-scoring-tool-for-in-and-outbreeding-speci","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 31(23), 3873 - 3874","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv446","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv446","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/23/3873/49035879/bioinformatics_31_23_3873.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5299999713897705}],"awards":[{"id":"https://openalex.org/G8062395987","display_name":"Integrated approach for increasing breeding efficiency in fruit tree crops","funder_award_id":"265582","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167987124.pdf","grobid_xml":"https://content.openalex.org/works/W2167987124.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1972582813","https://openalex.org/W1988645327","https://openalex.org/W2092501923","https://openalex.org/W2139760354","https://openalex.org/W2141218860","https://openalex.org/W2267078031"],"related_works":["https://openalex.org/W2164855536","https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W2169030126","https://openalex.org/W4281711902","https://openalex.org/W3206555169","https://openalex.org/W3016573916","https://openalex.org/W3157359833","https://openalex.org/W3024317680","https://openalex.org/W2070581548"],"abstract_inverted_index":{"UNLABELLED:":[0],"ASSIsT":[1,43,64,79,131],"(Automatic":[2],"SNP":[3,35,66],"ScorIng":[4],"Tool)":[5],"is":[6,132],"a":[7,54],"user-friendly":[8],"customized":[9],"pipeline":[10],"for":[11,24,34,124],"efficient":[12],"calling":[13],"and":[14,38,48,58,94,105,127,136,140,150],"filtering":[15],"of":[16,86],"SNPs":[17,73],"from":[18],"Illumina":[19,28],"Infinium":[20],"arrays,":[21],"specifically":[22],"devised":[23],"custom":[25],"genotyping":[26],"arrays.":[27],"has":[29],"developed":[30,133],"an":[31],"integrated":[32],"software":[33,123],"data":[36,47,148],"visualization":[37],"inspection":[39],"called":[40],"GenomeStudio":[41],"(GS).":[42],"builds":[44],"on":[45],"GS-derived":[46],"identifies":[49],"those":[50],"markers":[51],"that":[52],"follow":[53],"bi-allelic":[55],"genetic":[56,125],"model":[57],"show":[59],"reliable":[60],"genotype":[61],"calls.":[62],"Moreover,":[63],"re-edits":[65],"calls":[67],"with":[68],"null":[69],"alleles":[70],"or":[71],"additional":[72],"in":[74,83,98,115,134,138],"the":[75,84,99,116,120],"probe":[76],"annealing":[77],"site.":[78],"can":[80,111],"be":[81,112],"employed":[82],"analysis":[85],"different":[87],"population":[88],"types":[89],"such":[90],"as":[91],"full-sib":[92],"families":[93],"mating":[95],"schemes":[96],"used":[97],"plant":[100],"kingdom":[101],"(backcross,":[102],"F1,":[103],"F2),":[104],"unrelated":[106],"individuals.":[107],"The":[108,145],"final":[109],"result":[110],"directly":[113],"exported":[114],"format":[117],"required":[118],"by":[119],"most":[121],"common":[122],"mapping":[126],"marker-trait":[128],"association":[129],"analysis.":[130],"Python":[135],"runs":[137],"Windows":[139],"Linux.":[141],"AVAILABILITY":[142],"AND":[143],"IMPLEMENTATION:":[144],"software,":[146],"example":[147],"sets":[149],"tutorials":[151],"are":[152],"freely":[153],"available":[154],"at":[155],"http://compbiotoolbox.fmach.it/assist/.":[156],"CONTACT:":[157],"eric.vandeweg@wur.nl.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":4}],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2025-10-10T00:00:00"}