{"id":"https://openalex.org/W2162473677","doi":"https://doi.org/10.1093/bioinformatics/btv361","title":"MetaPathways v2.5: quantitative functional, taxonomic and usability improvements","display_name":"MetaPathways v2.5: quantitative functional, taxonomic and usability improvements","publication_year":2015,"publication_date":"2015-06-15","ids":{"openalex":"https://openalex.org/W2162473677","doi":"https://doi.org/10.1093/bioinformatics/btv361","mag":"2162473677","pmid":"https://pubmed.ncbi.nlm.nih.gov/26076725"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/20/3345/49036186/bioinformatics_31_20_3345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/20/3345/49036186/bioinformatics_31_20_3345.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035678865","display_name":"Kishori M. Konwar","orcid":"https://orcid.org/0000-0001-5152-4777"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Kishori M. Konwar","raw_affiliation_strings":["1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069094618","display_name":"Niels W. Hanson","orcid":"https://orcid.org/0000-0003-3081-0736"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210132220","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210132220"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Niels W. Hanson","raw_affiliation_strings":["2 Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre, 100-570 West 7th Avenue, Vancouver, BC, Canada and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre, 100-570 West 7th Avenue, Vancouver, BC, Canada and","institution_ids":["https://openalex.org/I4210132220","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026098353","display_name":"Maya P. Bhatia","orcid":"https://orcid.org/0000-0002-5236-8689"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Maya P. Bhatia","raw_affiliation_strings":["1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000581119","display_name":"Dongjae Kim","orcid":"https://orcid.org/0000-0003-2871-7815"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dongjae Kim","raw_affiliation_strings":["3 Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014522958","display_name":"Shang\u2010Ju Wu","orcid":"https://orcid.org/0000-0002-0772-869X"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shang-Ju Wu","raw_affiliation_strings":["3 Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055521337","display_name":"Aria S Hahn","orcid":"https://orcid.org/0000-0001-6105-7172"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Aria S. Hahn","raw_affiliation_strings":["1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024851427","display_name":"Connor Morgan\u2010Lang","orcid":"https://orcid.org/0000-0002-6714-0898"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210132220","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210132220"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Connor Morgan-Lang","raw_affiliation_strings":["2 Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre, 100-570 West 7th Avenue, Vancouver, BC, Canada and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre, 100-570 West 7th Avenue, Vancouver, BC, Canada and","institution_ids":["https://openalex.org/I4210132220","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036101924","display_name":"Hiu Kan Cheung","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hiu Kan Cheung","raw_affiliation_strings":["1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101411528","display_name":"Steven Hallam","orcid":"https://orcid.org/0000-0002-4889-6876"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210132220","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210132220"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Steven J. Hallam","raw_affiliation_strings":["1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,","2 Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre, 100-570 West 7th Avenue, Vancouver, BC, Canada and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Microbiology & Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada,","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"2 Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre, 100-570 West 7th Avenue, Vancouver, BC, Canada and","institution_ids":["https://openalex.org/I4210132220","https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5035678865"],"corresponding_institution_ids":["https://openalex.org/I141945490"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.0657,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.94570494,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"31","issue":"20","first_page":"3345","last_page":"3347"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.31529998779296875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.31529998779296875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3100999891757965,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.05249999836087227,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8127294778823853},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.7154726982116699},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7046566009521484},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.701420783996582},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.591286301612854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5210323333740234},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4582151770591736},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17350581288337708},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.10928022861480713},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09953498840332031}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8127294778823853},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.7154726982116699},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7046566009521484},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.701420783996582},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.591286301612854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5210323333740234},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4582151770591736},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17350581288337708},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.10928022861480713},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09953498840332031}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/20/3345/49036186/bioinformatics_31_20_3345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26076725","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26076725","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3576053","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4595896","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/20/3345","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/20/3345","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/20/3345/49036186/bioinformatics_31_20_3345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5799999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309949","display_name":"Canadian Institute for Advanced Research","ror":"https://ror.org/01sdtdd95"},{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320314000","display_name":"Compute Canada","ror":"https://ror.org/03ty8yr27"},{"id":"https://openalex.org/F4320314005","display_name":"Western Canada Research Grid","ror":null},{"id":"https://openalex.org/F4320315065","display_name":"Tula Foundation","ror":"https://ror.org/0029jxk29"},{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"},{"id":"https://openalex.org/F4320323180","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20"},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320338354","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162473677.pdf","grobid_xml":"https://content.openalex.org/works/W2162473677.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1964315675","https://openalex.org/W1983265703","https://openalex.org/W2055043387","https://openalex.org/W2066656905","https://openalex.org/W2070587756","https://openalex.org/W2083395367","https://openalex.org/W2087064593","https://openalex.org/W2103441770","https://openalex.org/W2108893650","https://openalex.org/W2108929776","https://openalex.org/W2116895571","https://openalex.org/W2128601422","https://openalex.org/W2133298156","https://openalex.org/W2160453515","https://openalex.org/W2162758337","https://openalex.org/W2168465568","https://openalex.org/W2180334400","https://openalex.org/W4236356242","https://openalex.org/W4237293127","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W4389670110","https://openalex.org/W2187546663","https://openalex.org/W2429057255","https://openalex.org/W148745890","https://openalex.org/W2611942503"],"abstract_inverted_index":{"UNLABELLED:":[0],"Next-generation":[1],"sequencing":[2],"is":[3,135],"producing":[4],"vast":[5],"amounts":[6],"of":[7,70,79],"sequence":[8,56],"information":[9,57],"from":[10],"natural":[11],"and":[12,29,40,51,75,96,118],"engineered":[13],"ecosystems.":[14],"Although":[15],"this":[16,60],"data":[17,38,145],"deluge":[18],"has":[19],"an":[20,49,108],"enormous":[21],"potential":[22],"to":[23,47],"transform":[24],"our":[25],"lives,":[26],"knowledge":[27],"creation":[28],"translation":[30],"need":[31],"software":[32,105],"applications":[33],"that":[34,58,99],"scale":[35],"with":[36,103],"increasing":[37],"processing":[39],"analysis":[41,52],"requirements.":[42],"Here,":[43],"we":[44,88],"present":[45],"improvements":[46],"MetaPathways,":[48],"annotation":[50,116],"pipeline":[53],"for":[54,114],"environmental":[55],"expedites":[59],"transformation.":[61],"We":[62],"specifically":[63],"address":[64],"pathway":[65],"prediction":[66],"hazards":[67],"through":[68,82,93],"integration":[69],"a":[71,83],"weighted":[72],"taxonomic":[73],"distance":[74],"enable":[76],"quantitative":[77],"comparison":[78],"assembled":[80],"annotations":[81],"normalized":[84],"read-mapping":[85],"measure.":[86],"Additionally,":[87],"improve":[89],"LAST":[90],"homology":[91],"searches":[92],"BLAST-equivalent":[94],"E-values":[95],"output":[97],"formats":[98],"are":[100,146],"natively":[101],"compatible":[102],"prevailing":[104],"applications.":[106],"Finally,":[107],"updated":[109],"graphical":[110],"user":[111],"interface":[112],"allows":[113],"keyword":[115],"query":[117],"projection":[119],"onto":[120],"user-defined":[121],"functional":[122],"gene":[123],"hierarchies,":[124],"including":[125],"the":[126],"Carbohydrate-Active":[127],"Enzyme":[128],"database.":[129],"AVAILABILITY":[130],"AND":[131],"IMPLEMENTATION:":[132],"MetaPathways":[133],"v2.5":[134],"available":[136,147],"on":[137],"GitHub:":[138],"http://github.com/hallamlab/metapathways2.":[139],"CONTACT:":[140],"shallam@mail.ubc.ca":[141],"SUPPLEMENTARY":[142],"INFORMATION:":[143],"Supplementary":[144],"at":[148],"Bioinformatics":[149],"online.":[150]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}