{"id":"https://openalex.org/W2154156327","doi":"https://doi.org/10.1093/bioinformatics/btv358","title":"SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data","display_name":"SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data","publication_year":2015,"publication_date":"2015-06-11","ids":{"openalex":"https://openalex.org/W2154156327","doi":"https://doi.org/10.1093/bioinformatics/btv358","mag":"2154156327","pmid":"https://pubmed.ncbi.nlm.nih.gov/26071141"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv358","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv358","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://bioinformatics.oxfordjournals.org/content/31/19/3105.long","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100659571","display_name":"Junho Kim","orcid":"https://orcid.org/0000-0002-7769-910X"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]},{"id":"https://openalex.org/I2799970807","display_name":"Severance Hospital","ror":"https://ror.org/044kjp413","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I193775966","https://openalex.org/I2799970807","https://openalex.org/I4210160791"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Junho Kim","raw_affiliation_strings":["1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","2 Department of Bio and Brain Engineering, KAIST, Yuseong-Gu, Daejeon 305-701, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","institution_ids":["https://openalex.org/I193775966","https://openalex.org/I2799970807"]},{"raw_affiliation_string":"2 Department of Bio and Brain Engineering, KAIST, Yuseong-Gu, Daejeon 305-701, Korea,","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061180241","display_name":"Sanghyeon Kim","orcid":"https://orcid.org/0000-0002-2517-4408"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]},{"id":"https://openalex.org/I2799970807","display_name":"Severance Hospital","ror":"https://ror.org/044kjp413","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I193775966","https://openalex.org/I2799970807","https://openalex.org/I4210160791"]},{"id":"https://openalex.org/I4210108859","display_name":"Stanley Medical Research Institute","ror":"https://ror.org/01pj5nn22","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210108859"]}],"countries":["KR","US"],"is_corresponding":true,"raw_author_name":"Sanghyeon Kim","raw_affiliation_strings":["1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","institution_ids":["https://openalex.org/I193775966","https://openalex.org/I2799970807"]},{"raw_affiliation_string":"3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and","institution_ids":["https://openalex.org/I4210108859"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143819351","display_name":"Sanghyeon Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]},{"id":"https://openalex.org/I2799970807","display_name":"Severance Hospital","ror":"https://ror.org/044kjp413","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I193775966","https://openalex.org/I2799970807","https://openalex.org/I4210160791"]},{"id":"https://openalex.org/I39534123","display_name":"Gwangju Institute of Science and Technology","ror":"https://ror.org/024kbgz78","country_code":"KR","type":"education","lineage":["https://openalex.org/I39534123"]},{"id":"https://openalex.org/I4210108859","display_name":"Stanley Medical Research Institute","ror":"https://ror.org/01pj5nn22","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210108859"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Sanghyeon Kim","raw_affiliation_strings":["1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and","4 School of Information and Communications, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","institution_ids":["https://openalex.org/I193775966","https://openalex.org/I2799970807"]},{"raw_affiliation_string":"3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and","institution_ids":["https://openalex.org/I4210108859"]},{"raw_affiliation_string":"4 School of Information and Communications, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea","institution_ids":["https://openalex.org/I39534123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043581759","display_name":"Hojung Nam","orcid":"https://orcid.org/0000-0002-5109-9114"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]},{"id":"https://openalex.org/I2799970807","display_name":"Severance Hospital","ror":"https://ror.org/044kjp413","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I193775966","https://openalex.org/I2799970807","https://openalex.org/I4210160791"]},{"id":"https://openalex.org/I39534123","display_name":"Gwangju Institute of Science and Technology","ror":"https://ror.org/024kbgz78","country_code":"KR","type":"education","lineage":["https://openalex.org/I39534123"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hojung Nam","raw_affiliation_strings":["4 School of Information and Communications, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea","1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 School of Information and Communications, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea","institution_ids":["https://openalex.org/I39534123"]},{"raw_affiliation_string":"1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","institution_ids":["https://openalex.org/I193775966","https://openalex.org/I2799970807"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452154","display_name":"Sangwoo Kim","orcid":"https://orcid.org/0000-0001-5356-0827"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]},{"id":"https://openalex.org/I2799970807","display_name":"Severance Hospital","ror":"https://ror.org/044kjp413","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I193775966","https://openalex.org/I2799970807","https://openalex.org/I4210160791"]},{"id":"https://openalex.org/I4210108859","display_name":"Stanley Medical Research Institute","ror":"https://ror.org/01pj5nn22","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210108859"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Sangwoo Kim","raw_affiliation_strings":["1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and","2 Department of Bio and Brain Engineering, KAIST, Yuseong-Gu, Daejeon 305-701, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","institution_ids":["https://openalex.org/I193775966","https://openalex.org/I2799970807"]},{"raw_affiliation_string":"3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and","institution_ids":["https://openalex.org/I4210108859"]},{"raw_affiliation_string":"2 Department of Bio and Brain Engineering, KAIST, Yuseong-Gu, Daejeon 305-701, Korea,","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452154","display_name":"Sangwoo Kim","orcid":"https://orcid.org/0000-0001-5356-0827"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]},{"id":"https://openalex.org/I2799970807","display_name":"Severance Hospital","ror":"https://ror.org/044kjp413","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I193775966","https://openalex.org/I2799970807","https://openalex.org/I4210160791"]},{"id":"https://openalex.org/I4210108859","display_name":"Stanley Medical Research Institute","ror":"https://ror.org/01pj5nn22","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210108859"]}],"countries":["KR","US"],"is_corresponding":true,"raw_author_name":"Sangwoo Kim","raw_affiliation_strings":["1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 120-752, Korea,","institution_ids":["https://openalex.org/I193775966","https://openalex.org/I2799970807"]},{"raw_affiliation_string":"3 Stanley Brain Research Laboratory, Stanley Medical Research Institute, Rockville, MD 20850, USA and","institution_ids":["https://openalex.org/I4210108859"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037879375","display_name":"Doheon Lee","orcid":"https://orcid.org/0000-0001-9070-4316"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Doheon Lee","raw_affiliation_strings":["2 Department of Bio and Brain Engineering, KAIST, Yuseong-Gu, Daejeon 305-701, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Bio and Brain Engineering, KAIST, Yuseong-Gu, Daejeon 305-701, Korea,","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5037879375","https://openalex.org/A5061180241","https://openalex.org/A5100452154"],"corresponding_institution_ids":["https://openalex.org/I157485424","https://openalex.org/I193775966","https://openalex.org/I2799970807","https://openalex.org/I4210108859"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3084,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.56982422,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"31","issue":"19","first_page":"3105","last_page":"3113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8808000087738037,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8808000087738037,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.04129999876022339,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.03869999945163727,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.7035619616508484},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.6705794334411621},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5530913472175598},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5095720291137695},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3460395932197571},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33711105585098267},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3084835410118103},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2563588619232178},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13173657655715942}],"concepts":[{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.7035619616508484},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.6705794334411621},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5530913472175598},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5095720291137695},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3460395932197571},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33711105585098267},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3084835410118103},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2563588619232178},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13173657655715942}],"mesh":[{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv358","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv358","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26071141","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26071141","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ir.ymlib.yonsei.ac.kr:22282913/141180","is_oa":true,"landing_page_url":"https://ir.ymlib.yonsei.ac.kr/handle/22282913/141180","pdf_url":"http://bioinformatics.oxfordjournals.org/content/31/19/3105.long","source":{"id":"https://openalex.org/S4306400691","display_name":"YUHSpace (Yonsei University Medical Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193775966","host_organization_name":"Yonsei University","host_organization_lineage":["https://openalex.org/I193775966"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/19/3105","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/19/3105","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"pmh:oai:ir.ymlib.yonsei.ac.kr:22282913/141180","is_oa":true,"landing_page_url":"https://ir.ymlib.yonsei.ac.kr/handle/22282913/141180","pdf_url":"http://bioinformatics.oxfordjournals.org/content/31/19/3105.long","source":{"id":"https://openalex.org/S4306400691","display_name":"YUHSpace (Yonsei University Medical Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193775966","host_organization_name":"Yonsei University","host_organization_lineage":["https://openalex.org/I193775966"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6340052926","display_name":null,"funder_award_id":"NRF-2012M3A9C4048758","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"},{"id":"https://openalex.org/G6748919361","display_name":null,"funder_award_id":"2012M3A9C4048758","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320321314","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96"},{"id":"https://openalex.org/F4320322030","display_name":"Ministry of Science, ICT and Future Planning","ror":"https://ror.org/032e49973"},{"id":"https://openalex.org/F4320335295","display_name":"Yonsei University College of Medicine","ror":"https://ror.org/01wjejq96"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154156327.pdf","grobid_xml":"https://content.openalex.org/works/W2154156327.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1987182404","https://openalex.org/W2013482405","https://openalex.org/W2023560061","https://openalex.org/W2025884426","https://openalex.org/W2045807857","https://openalex.org/W2046137036","https://openalex.org/W2056467120","https://openalex.org/W2064469303","https://openalex.org/W2065817684","https://openalex.org/W2069120646","https://openalex.org/W2079701909","https://openalex.org/W2085918869","https://openalex.org/W2086289230","https://openalex.org/W2090144921","https://openalex.org/W2093144236","https://openalex.org/W2097331151","https://openalex.org/W2098682209","https://openalex.org/W2099377894","https://openalex.org/W2103441770","https://openalex.org/W2104817809","https://openalex.org/W2108234281","https://openalex.org/W2115520939","https://openalex.org/W2120282622","https://openalex.org/W2121743948","https://openalex.org/W2123490990","https://openalex.org/W2126948011","https://openalex.org/W2136145671","https://openalex.org/W2136810701","https://openalex.org/W2138601221","https://openalex.org/W2144420455","https://openalex.org/W2146005104","https://openalex.org/W2150506261","https://openalex.org/W2150575159","https://openalex.org/W2153056550","https://openalex.org/W2155943701","https://openalex.org/W2157852151","https://openalex.org/W2166493347","https://openalex.org/W4240700790","https://openalex.org/W4247053599","https://openalex.org/W4293196852","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2060908277","https://openalex.org/W2048083752","https://openalex.org/W2438531772","https://openalex.org/W1992103432","https://openalex.org/W4251027247","https://openalex.org/W81105053","https://openalex.org/W1881137434","https://openalex.org/W3021321537","https://openalex.org/W2081894066","https://openalex.org/W2898777353"],"abstract_inverted_index":{"MOTIVATION:":[0],"Finding":[1],"somatic":[2,28,35,76,92,125,170,196],"mutations":[3],"from":[4,78,198],"massively":[5],"parallel":[6],"sequencing":[7,203],"data":[8,224],"is":[9,213],"becoming":[10],"a":[11,20,67,90,115,177,181],"standard":[12],"process":[13],"in":[14,54,105,168,180],"genome-based":[15],"biomedical":[16],"studies.":[17],"There":[18],"are":[19,225],"number":[21,37],"of":[22,34,59,102,109,124,130,145,151,184,210],"robust":[23],"methods":[24],"developed":[25,66],"for":[26],"detecting":[27],"single":[29],"nucleotide":[30],"variations":[31],"However,":[32],"detection":[33],"copy":[36],"alteration":[38],"has":[39],"been":[40],"substantially":[41],"less":[42],"explored":[43],"and":[44,57,100,126],"remains":[45],"vulnerable":[46],"to":[47,119],"frequently":[48],"raised":[49],"sampling":[50],"issues:":[51],"low":[52],"frequency":[53],"cell":[55],"population":[56,123],"absence":[58],"the":[60,98,103,106,110,121,131,138,142,149,166,211],"matched":[61,84],"control":[62,85],"samples.":[63,86],"RESULTS:":[64],"We":[65,87,112],"novel":[68],"computational":[69],"method":[70,212],"SoloDel":[71,163,175,189],"that":[72,96],"accurately":[73],"classifies":[74],"low-frequent":[75],"deletions":[77,197],"germline":[79,127],"ones":[80],"with":[81,141,158],"or":[82,219],"without":[83,173],"first":[88],"constructed":[89],"probabilistic,":[91],"mutation":[93],"progression":[94],"model":[95,118,133],"describes":[97],"occurrence":[99],"propagation":[101],"event":[104],"cellular":[107],"lineage":[108],"sample.":[111],"then":[113],"built":[114],"Gaussian":[116],"mixture":[117,132],"represent":[120],"mixed":[122],"deletions.":[128],"Parameters":[129],"could":[134,190],"be":[135],"estimated":[136],"using":[137],"expectation-maximization":[139],"algorithm":[140],"observed":[143],"distribution":[144],"read-depth":[146],"ratios":[147],"at":[148,215,227],"points":[150],"discordant-read":[152],"based":[153],"initial":[154],"deletion":[155],"calls.":[156],"Combined":[157],"conventional":[159],"structural":[160],"variation":[161],"caller,":[162],"greatly":[164],"increased":[165],"accuracy":[167],"classifying":[169],"mutations.":[171],"Even":[172],"control,":[174],"maintained":[176],"comparable":[178],"performance":[179],"wide":[182],"range":[183],"mutated":[185],"subpopulation":[186],"size":[187],"(10-70%).":[188],"also":[191],"successfully":[192],"recall":[193],"experimentally":[194],"validated":[195],"previously":[199],"reported":[200],"neuropsychiatric":[201],"whole-genome":[202],"data.":[204],"AVAILABILITY":[205],"AND":[206],"IMPLEMENTATION:":[207],"Java-based":[208],"implementation":[209],"available":[214,226],"http://sourceforge.net/projects/solodel/":[216],"CONTACT:":[217],"swkim@yuhs.ac":[218],"dhlee@biosoft.kaist.ac.kr":[220],"SUPPLEMENTARY":[221],"INFORMATION:":[222],"Supplementary":[223],"Bioinformatics":[228],"online.":[229]},"counts_by_year":[{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
