{"id":"https://openalex.org/W2125557405","doi":"https://doi.org/10.1093/bioinformatics/btv330","title":"QVZ: lossy compression of quality values","display_name":"QVZ: lossy compression of quality values","publication_year":2015,"publication_date":"2015-05-28","ids":{"openalex":"https://openalex.org/W2125557405","doi":"https://doi.org/10.1093/bioinformatics/btv330","mag":"2125557405","pmid":"https://pubmed.ncbi.nlm.nih.gov/26026138"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv330","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/19/3122/24386193/btv330.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/19/3122/24386193/btv330.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038618996","display_name":"Greg Malysa","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Greg Malysa","raw_affiliation_strings":["Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044149683","display_name":"Mikel Hern\u00e1ez","orcid":"https://orcid.org/0000-0003-0443-2305"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mikel Hernaez","raw_affiliation_strings":["Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045294377","display_name":"Idoia Ochoa","orcid":"https://orcid.org/0000-0003-1864-7868"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Idoia Ochoa","raw_affiliation_strings":["Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031236216","display_name":"Milind Rao","orcid":"https://orcid.org/0000-0003-2649-3205"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Milind Rao","raw_affiliation_strings":["Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089507481","display_name":"Karthik Ganesan","orcid":"https://orcid.org/0000-0002-7559-0928"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karthik Ganesan","raw_affiliation_strings":["Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043344688","display_name":"Tsachy Weissman","orcid":"https://orcid.org/0009-0008-1099-691X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tsachy Weissman","raw_affiliation_strings":["Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA ,","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5038618996","https://openalex.org/A5044149683","https://openalex.org/A5045294377"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":13.3539,"has_fulltext":true,"cited_by_count":66,"citation_normalized_percentile":{"value":0.98708337,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"31","issue":"19","first_page":"3122","last_page":"3129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.8970000147819519,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.8970000147819519,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10901","display_name":"Advanced Data Compression Techniques","score":0.017500000074505806,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lossy-compression","display_name":"Lossy compression","score":0.9231388568878174},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6476206183433533},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.5834629535675049},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.562160074710846},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.4357355237007141},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.21687719225883484},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.156654953956604},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.08647304773330688},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.049081772565841675},{"id":"https://openalex.org/keywords/composite-material","display_name":"Composite material","score":0.04471158981323242}],"concepts":[{"id":"https://openalex.org/C165021410","wikidata":"https://www.wikidata.org/wiki/Q55564","display_name":"Lossy compression","level":2,"score":0.9231388568878174},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6476206183433533},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.5834629535675049},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.562160074710846},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.4357355237007141},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.21687719225883484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.156654953956604},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.08647304773330688},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.049081772565841675},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.04471158981323242},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btv330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv330","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/19/3122/24386193/btv330.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26026138","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26026138","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmid:29177464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29177464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:4761866","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5856090","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/19/3122","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/19/3122","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5998985","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5998985","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv330","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/19/3122/24386193/btv330.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8675792435","display_name":null,"funder_award_id":"U01 CA198943","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321705","display_name":"Eusko Jaurlaritza","ror":"https://ror.org/00pz2fp31"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125557405.pdf","grobid_xml":"https://content.openalex.org/works/W2125557405.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W109642580","https://openalex.org/W1976369775","https://openalex.org/W2004669471","https://openalex.org/W2020255088","https://openalex.org/W2051929999","https://openalex.org/W2082084282","https://openalex.org/W2092373383","https://openalex.org/W2092880969","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2109153336","https://openalex.org/W2110800670","https://openalex.org/W2111044311","https://openalex.org/W2114792961","https://openalex.org/W2118526609","https://openalex.org/W2124985265","https://openalex.org/W2127218421","https://openalex.org/W2143423077","https://openalex.org/W2147733682","https://openalex.org/W2148294372","https://openalex.org/W2150131459","https://openalex.org/W2150593711","https://openalex.org/W2159084616","https://openalex.org/W2163251627","https://openalex.org/W2168133698","https://openalex.org/W3098304617","https://openalex.org/W6678914141"],"related_works":["https://openalex.org/W2547124190","https://openalex.org/W2385628723","https://openalex.org/W2888954728","https://openalex.org/W2552401318","https://openalex.org/W108076602","https://openalex.org/W3180760233","https://openalex.org/W4384342390","https://openalex.org/W3035703949","https://openalex.org/W4247601675","https://openalex.org/W1033938421"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recent":[1],"advancements":[2],"in":[3,12,50,136,146,173],"sequencing":[4,16],"technology":[5],"have":[6],"led":[7],"to":[8,110,116,157],"a":[9,17,41,119,151,154],"drastic":[10],"reduction":[11],"the":[13,46,64,68,92,102,108,124,137,147,161],"cost":[14],"of":[15,25,63,76],"genome.":[18],"This":[19],"has":[20],"generated":[21],"an":[22],"unprecedented":[23],"amount":[24],"genomic":[26,51],"data":[27,52,77,132,140,190],"that":[28,130,149,158],"must":[29],"be":[30,117,177],"stored,":[31],"processed":[32],"and":[33,56,100,175],"transmitted.":[34],"To":[35],"facilitate":[36],"this":[37],"effort,":[38],"we":[39,128],"propose":[40],"new":[42],"lossy":[43],"compressor":[44],"for":[45,74,96,101,150],"quality":[47,163],"values":[48,164],"presented":[49],"files":[53],"(e.g.":[54],"FASTQ":[55],"SAM":[57],"files),":[58],"which":[59],"comprise":[60],"roughly":[61],"half":[62],"storage":[65],"space":[66],"(in":[67],"uncompressed":[69],"domain).":[70],"Lossy":[71],"compression":[72,75],"allows":[73,107],"beyond":[78],"its":[79],"lossless":[80,103],"limit.":[81],"RESULTS:":[82],"The":[83],"proposed":[84,94,144],"algorithm":[85],"QVZ":[86,170],"exhibits":[87],"better":[88,134],"rate-distortion":[89],"performance":[90,135],"than":[91,139],"previously":[93,143],"algorithms,":[95,145],"several":[97],"distortion":[98,114],"metrics":[99],"case.":[104],"Moreover,":[105],"it":[106],"user":[109],"define":[111],"any":[112],"quasi-convex":[113],"function":[115],"minimized,":[118],"feature":[120],"not":[121],"supported":[122],"by":[123],"previous":[125],"algorithms.":[126],"Finally,":[127],"show":[129],"QVZ-compressed":[131],"exhibit":[133],"genotyping":[138,155],"compressed":[141],"with":[142,160],"sense":[148],"similar":[152],"rate,":[153],"closer":[156],"achieved":[159],"original":[162],"is":[165,171],"obtained.":[166],"AVAILABILITY":[167],"AND":[168],"IMPLEMENTATION:":[169],"written":[172],"C":[174],"can":[176],"downloaded":[178],"from":[179],"https://github.com/mikelhernaez/qvz.":[180],"CONTACT:":[181],"mhernaez@stanford.edu":[182],"or":[183,185],"gmalysa@stanford.edu":[184],"iochoa@stanford.edu":[186],"SUPPLEMENTARY":[187],"INFORMATION:":[188],"Supplementary":[189],"are":[191],"available":[192],"at":[193],"Bioinformatics":[194],"online.":[195]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":2}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2016-06-24T00:00:00"}
