{"id":"https://openalex.org/W2125081402","doi":"https://doi.org/10.1093/bioinformatics/btv306","title":"TRAL: tandem repeat annotation library","display_name":"TRAL: tandem repeat annotation library","publication_year":2015,"publication_date":"2015-05-18","ids":{"openalex":"https://openalex.org/W2125081402","doi":"https://doi.org/10.1093/bioinformatics/btv306","mag":"2125081402","pmid":"https://pubmed.ncbi.nlm.nih.gov/25987568"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv306","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv306","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/3051/49035492/bioinformatics_31_18_3051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/3051/49035492/bioinformatics_31_18_3051.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010661696","display_name":"Elke Schaper","orcid":"https://orcid.org/0000-0003-3734-2496"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":true,"raw_author_name":"Elke Schaper","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051093327","display_name":"Alexander M. Korsunsky","orcid":"https://orcid.org/0000-0002-3558-5198"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"Alexander Korsunsky","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":null,"display_name":"J\u016blija Pe\u010derska","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"J\u016blija Pe\u010derska","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101873238","display_name":"Antonio Messina","orcid":"https://orcid.org/0000-0001-7778-2037"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"Antonio Messina","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103943631","display_name":"Riccardo Murri","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"Riccardo Murri","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069082993","display_name":"Heinz Stockinger","orcid":"https://orcid.org/0000-0003-4666-7719"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"Heinz Stockinger","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089205418","display_name":"Stefan Zoller","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"Stefan Zoller","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046692009","display_name":"Maria Anisimova","orcid":"https://orcid.org/0000-0001-8145-7966"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"Maria Anisimova","raw_affiliation_strings":["1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Vital-IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 2SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, 3Department of Computer Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland, 4Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, 5Department of Biosystems Science and Engineering, ETH Z\u00fcrich, 4058 Basel, Switzerland, 6Services and Support for Science IT, University of Z\u00fcrich, 8057 Z\u00fcrich, Switzerland and 7Institute of Applied Simulations, School of Life Sciences und Facility Management, Z\u00fcrich University of Applied Sciences, 8820 W\u00e4denswil, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5010661696"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4092182"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4127,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.63147141,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"31","issue":"18","first_page":"3051","last_page":"3053"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8655461072921753},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7525652647018433},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.6918841600418091},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6508370637893677},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5592818260192871},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5086732506752014},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5085753202438354},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.49744752049446106},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.4843493700027466},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44384288787841797},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.404996395111084},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34583115577697754},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3387588858604431},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.29642629623413086},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1901359260082245},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1322842538356781},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07780858874320984}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8655461072921753},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7525652647018433},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.6918841600418091},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6508370637893677},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5592818260192871},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5086732506752014},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5085753202438354},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.49744752049446106},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.4843493700027466},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44384288787841797},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.404996395111084},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34583115577697754},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3387588858604431},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.29642629623413086},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1901359260082245},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1322842538356781},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07780858874320984},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":12,"locations":[{"id":"doi:10.1093/bioinformatics/btv306","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv306","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/3051/49035492/bioinformatics_31_18_3051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25987568","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25987568","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_968BCDD6E6EF","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_968BCDD6E6EF","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 31, no. 18, pp. 3051-3053","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.zora.uzh.ch:155197","is_oa":true,"landing_page_url":"https://www.zora.uzh.ch/id/eprint/155197/1/ZORA_NL_155197.pdf","pdf_url":"https://www.zora.uzh.ch/id/eprint/155197/1/ZORA_NL_155197.pdf","source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Schaper, Elke; Korsunsky, Alexander; Pe\u010derska, J\u016blija; Messina, Antonio; Murri, Riccardo; Stockinger, Heinz; Zoller, Stefan; Xenarios, Ioannis; Anisimova, Maria (2015). TRAL: tandem repeat annotation library. Bioinformatics, 31(18):3051-3053.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doc.rero.ch:295950","is_oa":false,"landing_page_url":"http://doc.rero.ch/record/295950/files/btv306.pdf","pdf_url":"http://doc.rero.ch/record/295950/files/btv306.pdf","source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:iris.unil.ch:iris/158446","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/158446","pdf_url":"https://iris.unil.ch/bitstreams/4a44e5ad-427d-4303-81df-48aefd7455d0/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:doi:10.5167/uzh-155197","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:digitalcollection.zhaw.ch:11475/8265","is_oa":true,"landing_page_url":"https://hdl.handle.net/11475/8265","pdf_url":null,"source":{"id":"https://openalex.org/S4306401811","display_name":"Z\u00fcrcher Hochschule f\u00fcr Angewandte Wissenschaften digital collection (Zurich University of Applied Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200744771","host_organization_name":"ZHAW Zurich University of Applied Sciences","host_organization_lineage":["https://openalex.org/I200744771"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/18/3051","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/18/3051","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/103876","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/103876","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 31 (18)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000103876","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000103876","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Other"},{"id":"doi:10.5167/uzh-155197","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-155197","pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv306","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv306","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/3051/49035492/bioinformatics_31_18_3051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"},{"id":"https://openalex.org/F4320337269","display_name":"Z\u00fcrcher Hochschule f\u00fcr Angewandte Wissenschaften","ror":"https://ror.org/05pmsvm27"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125081402.pdf","grobid_xml":"https://content.openalex.org/works/W2125081402.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1973837041","https://openalex.org/W1991731239","https://openalex.org/W1997199912","https://openalex.org/W2093744222","https://openalex.org/W2098914548","https://openalex.org/W2105961968","https://openalex.org/W2112814753","https://openalex.org/W2113130665","https://openalex.org/W2116426890","https://openalex.org/W2126597349","https://openalex.org/W2132505033","https://openalex.org/W2135621733","https://openalex.org/W2141885858","https://openalex.org/W2151831732","https://openalex.org/W2559291328","https://openalex.org/W2738732431","https://openalex.org/W4320301318","https://openalex.org/W6742257549"],"related_works":["https://openalex.org/W2389552174","https://openalex.org/W2502722637","https://openalex.org/W1892467659","https://openalex.org/W155589836","https://openalex.org/W2167662847","https://openalex.org/W1551406738","https://openalex.org/W2369308426","https://openalex.org/W1625716732","https://openalex.org/W2293457016","https://openalex.org/W2141455202"],"abstract_inverted_index":{"MOTIVATION:":[0],"Currently,":[1],"more":[2],"than":[3],"40":[4],"sequence":[5],"tandem":[6,23,53,76],"repeat":[7,24,54,77],"detectors":[8],"are":[9],"published,":[10],"providing":[11],"heterogeneous,":[12],"partly":[13,15],"complementary,":[14],"conflicting":[16],"results.":[17],"RESULTS:":[18],"We":[19],"present":[20],"TRAL,":[21,68],"a":[22,52,74],"annotation":[25,55,78,101],"library":[26,113],"that":[27],"allows":[28],"running":[29],"and":[30,50,56,98,114,120],"parsing":[31],"of":[32,37,73],"various":[33],"detection":[34],"outputs,":[35],"clustering":[36],"redundant":[38],"or":[39],"overlapping":[40],"annotations,":[41,49],"several":[42],"statistical":[43],"frameworks":[44],"for":[45,95],"filtering":[46],"false":[47],"positive":[48],"importantly":[51],"refinement":[57],"module":[58],"based":[59],"on":[60,80],"circular":[61],"profile":[62],"hidden":[63],"Markov":[64],"models":[65],"(cpHMMs).":[66],"Using":[67],"we":[69],"evaluated":[70],"the":[71],"performance":[72],"multi-step":[75],"workflow":[79],"547":[81],"085":[82],"sequences":[83],"in":[84],"UniProtKB/Swiss-Prot.":[85],"The":[86],"researcher":[87],"can":[88],"use":[89],"these":[90],"results":[91],"to":[92,99],"predict":[93],"run-times":[94],"specific":[96],"datasets,":[97],"choose":[100],"complexity":[102],"accordingly.":[103],"AVAILABILITY":[104],"AND":[105],"IMPLEMENTATION:":[106],"TRAL":[107],"is":[108,115],"an":[109],"open-source":[110],"Python":[111],"3":[112],"available,":[116],"together":[117],"with":[118],"documentation":[119],"tutorials":[121],"via":[122],"http://www.vital-it.ch/software/tral.":[123],"CONTACT:":[124],"elke.schaper@isb-sib.ch.":[125]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
