{"id":"https://openalex.org/W2115089273","doi":"https://doi.org/10.1093/bioinformatics/btv304","title":"Repeat- and error-aware comparison of deletions","display_name":"Repeat- and error-aware comparison of deletions","publication_year":2015,"publication_date":"2015-05-15","ids":{"openalex":"https://openalex.org/W2115089273","doi":"https://doi.org/10.1093/bioinformatics/btv304","mag":"2115089273","pmid":"https://pubmed.ncbi.nlm.nih.gov/25979471"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/2947/49035299/bioinformatics_31_18_2947.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/2947/49035299/bioinformatics_31_18_2947.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062211046","display_name":"Roland Wittler","orcid":"https://orcid.org/0000-0002-2249-9880"},"institutions":[{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE","FI","NL"],"is_corresponding":true,"raw_author_name":"Roland Wittler","raw_affiliation_strings":["1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland","institution_ids":["https://openalex.org/I1341640284","https://openalex.org/I20121455","https://openalex.org/I32943570","https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067570776","display_name":"Tobias Marschall","orcid":"https://orcid.org/0000-0002-9376-1030"},"institutions":[{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE","FI","NL"],"is_corresponding":true,"raw_author_name":"Tobias Marschall","raw_affiliation_strings":["1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland","institution_ids":["https://openalex.org/I1341640284","https://openalex.org/I20121455","https://openalex.org/I32943570","https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001148638","display_name":"Alexander Sch\u00f6nhuth","orcid":"https://orcid.org/0000-0003-3529-0856"},"institutions":[{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE","FI","NL"],"is_corresponding":false,"raw_author_name":"Alexander Sch\u00f6nhuth","raw_affiliation_strings":["1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland","institution_ids":["https://openalex.org/I1341640284","https://openalex.org/I20121455","https://openalex.org/I32943570","https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043558409","display_name":"Veli M\u00e4kinen","orcid":"https://orcid.org/0000-0003-4454-1493"},"institutions":[{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE","FI","NL"],"is_corresponding":false,"raw_author_name":"Veli M\u00e4kinen","raw_affiliation_strings":["1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Genome Informatics, Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld University, Germany, 2Center for Bioinformatics, Saarland University and Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany, 3Centrum Wiskunde & Informatica (CWI), Life Sciences Group, Amsterdam, The Netherlands and 4Helsinki Institute for Information Technology (HIIT), Department of Computer Science, University of Helsinki, Finland","institution_ids":["https://openalex.org/I1341640284","https://openalex.org/I20121455","https://openalex.org/I32943570","https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062211046","https://openalex.org/A5067570776"],"corresponding_institution_ids":["https://openalex.org/I1341640284","https://openalex.org/I20121455","https://openalex.org/I32943570","https://openalex.org/I4210109712","https://openalex.org/I91712215"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5162,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.82271491,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"31","issue":"18","first_page":"2947","last_page":"2954"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5443000197410583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5443000197410583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.2906999886035919,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.0348999984562397,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7838548421859741},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.6842763423919678},{"id":"https://openalex.org/keywords/comparability","display_name":"Comparability","score":0.6759250164031982},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4982259273529053},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4568406641483307},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.44155800342559814},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.41802114248275757},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3303315341472626},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3295506238937378},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.25361257791519165},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1632114052772522},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15928778052330017},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1060253381729126},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0843680202960968}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7838548421859741},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.6842763423919678},{"id":"https://openalex.org/C197947376","wikidata":"https://www.wikidata.org/wiki/Q5155608","display_name":"Comparability","level":2,"score":0.6759250164031982},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4982259273529053},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4568406641483307},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.44155800342559814},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.41802114248275757},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3303315341472626},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3295506238937378},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.25361257791519165},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1632114052772522},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15928778052330017},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1060253381729126},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0843680202960968},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btv304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/2947/49035299/bioinformatics_31_18_2947.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25979471","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25979471","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cwi.nl:23950","is_oa":true,"landing_page_url":"https://ir.cwi.nl/pub/23950","pdf_url":"https://ir.cwi.nl/pub/23950/23950B.pdf","source":{"id":"https://openalex.org/S7407055335","display_name":"Centrum Wiskunde & Informatica (CWI), the national research institute for mathematics and computer science in the Netherlands","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics vol. 31 no. 18, pp. 2947-2954","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:escidoc.org:escidoc:2224003","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0028-E11C-4","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/18/2947","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/18/2947","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pub.librecat.org:2764612","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/2764612","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wittler R, Marschall T, Sch\u00f6nhuth A, Makinen V. Repeat- and error-aware comparison of deletions. &lt;em&gt;Bioinformatics&lt;/em&gt;. 2015;31(18):2947-2954.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pub.uni-bielefeld.de:2941796","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2941796","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wittler R, Marschall T, Sch\u00f6nhuth A, M\u00e4kinen V. Repeat- and error-aware comparison of deletions. &lt;em&gt;Bioinformatics&lt;/em&gt;. 2015;31(18):2947-2954.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.mpg.de:item_2224003","is_oa":false,"landing_page_url":"https://hdl.handle.net/11858/00-001M-0000-0028-E11C-4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv304","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/18/2947/49035299/bioinformatics_31_18_2947.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1967382114","https://openalex.org/W1982332213","https://openalex.org/W1997631042","https://openalex.org/W2011484895","https://openalex.org/W2019909127","https://openalex.org/W2030295903","https://openalex.org/W2046137036","https://openalex.org/W2046601740","https://openalex.org/W2052899946","https://openalex.org/W2060965924","https://openalex.org/W2065817684","https://openalex.org/W2069577154","https://openalex.org/W2083870688","https://openalex.org/W2107830007","https://openalex.org/W2112691802","https://openalex.org/W2118961319","https://openalex.org/W2120748415","https://openalex.org/W2122732537","https://openalex.org/W2131581981","https://openalex.org/W2132731072","https://openalex.org/W2135361281","https://openalex.org/W2138044148","https://openalex.org/W2142642738","https://openalex.org/W2149992227","https://openalex.org/W2154397429","https://openalex.org/W2163549019","https://openalex.org/W2164183767","https://openalex.org/W2171777347","https://openalex.org/W2885727518","https://openalex.org/W4285719527","https://openalex.org/W6604435963","https://openalex.org/W6661899872"],"related_works":["https://openalex.org/W2365594754","https://openalex.org/W4287902769","https://openalex.org/W2575292835","https://openalex.org/W3001140700","https://openalex.org/W3021704418","https://openalex.org/W2995453361","https://openalex.org/W4390295458","https://openalex.org/W1990407237","https://openalex.org/W2092282998","https://openalex.org/W2053982300"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1],"number":[2],"of":[3,15,30,44,51,73,96,127,133,142],"reported":[4],"genetic":[5],"variants":[6],"is":[7,22,103,149],"rapidly":[8],"growing,":[9],"empowered":[10],"by":[11],"ever":[12],"faster":[13],"accumulation":[14],"next-generation":[16],"sequencing":[17],"data.":[18],"A":[19],"major":[20],"issue":[21],"comparability.":[23],"Standards":[24],"that":[25,75,89,100,113],"address":[26],"the":[27,42,49,117,131,139],"combined":[28],"problem":[29],"inaccurately":[31],"predicted":[32],"breakpoints":[33],"and":[34,47,80,112,152],"repeat-induced":[35,81],"ambiguities":[36],"are":[37,164],"missing.":[38],"This":[39],"decisively":[40],"lowers":[41],"quality":[43],"'consensus'":[45],"callsets":[46,120],"hampers":[48],"removal":[50],"duplicate":[52,128],"entries":[53,129],"in":[54,62,130],"variant":[55],"databases,":[56],"which":[57,136],"can":[58,115],"have":[59],"deleterious":[60],"effects":[61],"downstream":[63],"analyses.":[64],"RESULTS:":[65],"We":[66,83,98,122],"introduce":[67],"a":[68,85],"sound":[69],"framework":[70],"for":[71],"comparison":[72],"deletions":[74],"captures":[76],"both":[77],"tool-induced":[78],"inaccuracies":[79],"ambiguities.":[82],"present":[84],"maximum":[86],"matching":[87],"algorithm":[88],"outputs":[90],"virtual":[91],"duplicates":[92],"among":[93,119],"two":[94],"sets":[95],"predictions/annotations.":[97],"demonstrate":[99],"our":[101,143],"approach":[102],"clearly":[104],"superior":[105],"over":[106],"ad":[107],"hoc":[108],"criteria,":[109],"like":[110],"overlap,":[111],"it":[114],"reduce":[116],"redundancy":[118],"substantially.":[121],"also":[123],"identify":[124],"large":[125],"amounts":[126],"Database":[132],"Genomic":[134],"Variants,":[135],"points":[137],"out":[138],"immediate":[140],"relevance":[141],"approach.":[144],"AVAILABILITY":[145],"AND":[146],"IMPLEMENTATION:":[147],"Implementation":[148],"open":[150],"source":[151],"available":[153,165],"from":[154],"https://bitbucket.org/readdi/readdi":[155],"CONTACT:":[156],"roland.wittler@uni-bielefeld.de":[157],"or":[158],"t.marschall@mpi-inf.mpg.de":[159],"SUPPLEMENTARY":[160],"INFORMATION:":[161],"Supplementary":[162],"data":[163],"at":[166],"Bioinformatics":[167],"online.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
