{"id":"https://openalex.org/W2113934558","doi":"https://doi.org/10.1093/bioinformatics/btv283","title":"IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data","display_name":"IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data","publication_year":2015,"publication_date":"2015-05-06","ids":{"openalex":"https://openalex.org/W2113934558","doi":"https://doi.org/10.1093/bioinformatics/btv283","mag":"2113934558","pmid":"https://pubmed.ncbi.nlm.nih.gov/25953799"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv283","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv283","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2870/49035356/bioinformatics_31_17_2870.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2870/49035356/bioinformatics_31_17_2870.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069541241","display_name":"Adrian Baez\u2010Ortega","orcid":"https://orcid.org/0000-0002-9201-4420"},"institutions":[{"id":"https://openalex.org/I4210101737","display_name":"Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","ror":"https://ror.org/015g99884","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101737"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Adrian Baez-Ortega","raw_affiliation_strings":["1 Information Technology Department, Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables (ITER), Santa Cruz de Tenerife, Spain,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Information Technology Department, Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables (ITER), Santa Cruz de Tenerife, Spain,","institution_ids":["https://openalex.org/I4210101737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032631487","display_name":"Fabi\u00e1n Lorenzo-D\u00edaz","orcid":"https://orcid.org/0000-0002-3398-198X"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]},{"id":"https://openalex.org/I2800401438","display_name":"Hospital Universitario de Canarias","ror":"https://ror.org/05qndj312","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I2800401438"]},{"id":"https://openalex.org/I4210088232","display_name":"Hospital Universitario Nuestra Se\u00f1ora de Candelaria","ror":"https://ror.org/005a3p084","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210088232"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fabian Lorenzo-Diaz","raw_affiliation_strings":["2 Applied Genomics Group (G2A), Instituto Universitario de Enfermedades Tropicales y Salud P\u00fablica de Canarias (CIBICAN), Universidad de La Laguna, Santa Cruz de Tenerife, Spain,","3 Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Santa Cruz de Tenerife, Spain,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Applied Genomics Group (G2A), Instituto Universitario de Enfermedades Tropicales y Salud P\u00fablica de Canarias (CIBICAN), Universidad de La Laguna, Santa Cruz de Tenerife, Spain,","institution_ids":["https://openalex.org/I158438070","https://openalex.org/I2800401438"]},{"raw_affiliation_string":"3 Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Santa Cruz de Tenerife, Spain,","institution_ids":["https://openalex.org/I4210088232"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067683780","display_name":"Mariano Hern\u00e1ndez","orcid":"https://orcid.org/0000-0003-1219-0246"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]},{"id":"https://openalex.org/I2800401438","display_name":"Hospital Universitario de Canarias","ror":"https://ror.org/05qndj312","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I2800401438"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mariano Hernandez","raw_affiliation_strings":["2 Applied Genomics Group (G2A), Instituto Universitario de Enfermedades Tropicales y Salud P\u00fablica de Canarias (CIBICAN), Universidad de La Laguna, Santa Cruz de Tenerife, Spain,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Applied Genomics Group (G2A), Instituto Universitario de Enfermedades Tropicales y Salud P\u00fablica de Canarias (CIBICAN), Universidad de La Laguna, Santa Cruz de Tenerife, Spain,","institution_ids":["https://openalex.org/I158438070","https://openalex.org/I2800401438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008896618","display_name":"Carlos Ignacio Gonzalez-Vila","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101737","display_name":"Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","ror":"https://ror.org/015g99884","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101737"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Ignacio Gonzalez-Vila","raw_affiliation_strings":["1 Information Technology Department, Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables (ITER), Santa Cruz de Tenerife, Spain,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Information Technology Department, Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables (ITER), Santa Cruz de Tenerife, Spain,","institution_ids":["https://openalex.org/I4210101737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065616615","display_name":"Jos\u00e9 Luis Roda Garc\u00eda","orcid":"https://orcid.org/0000-0003-1235-3578"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jose Luis Roda-Garcia","raw_affiliation_strings":["4 Departamento de Ingenier\u00eda Inform\u00e1tica y de Sistemas, Universidad de La Laguna, Santa Cruz de Tenerife, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Departamento de Ingenier\u00eda Inform\u00e1tica y de Sistemas, Universidad de La Laguna, Santa Cruz de Tenerife, Spain and","institution_ids":["https://openalex.org/I158438070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053595798","display_name":"Marcos Colebrook","orcid":"https://orcid.org/0000-0003-3074-1697"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Marcos Colebrook","raw_affiliation_strings":["4 Departamento de Ingenier\u00eda Inform\u00e1tica y de Sistemas, Universidad de La Laguna, Santa Cruz de Tenerife, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Departamento de Ingenier\u00eda Inform\u00e1tica y de Sistemas, Universidad de La Laguna, Santa Cruz de Tenerife, Spain and","institution_ids":["https://openalex.org/I158438070"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056138948","display_name":"Carlos Flores","orcid":"https://orcid.org/0000-0001-5352-069X"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]},{"id":"https://openalex.org/I2800401438","display_name":"Hospital Universitario de Canarias","ror":"https://ror.org/05qndj312","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I2800401438"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210088232","display_name":"Hospital Universitario Nuestra Se\u00f1ora de Candelaria","ror":"https://ror.org/005a3p084","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210088232"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Carlos Flores","raw_affiliation_strings":["2 Applied Genomics Group (G2A), Instituto Universitario de Enfermedades Tropicales y Salud P\u00fablica de Canarias (CIBICAN), Universidad de La Laguna, Santa Cruz de Tenerife, Spain,","3 Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Santa Cruz de Tenerife, Spain,","5 CIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Applied Genomics Group (G2A), Instituto Universitario de Enfermedades Tropicales y Salud P\u00fablica de Canarias (CIBICAN), Universidad de La Laguna, Santa Cruz de Tenerife, Spain,","institution_ids":["https://openalex.org/I158438070","https://openalex.org/I2800401438"]},{"raw_affiliation_string":"3 Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Santa Cruz de Tenerife, Spain,","institution_ids":["https://openalex.org/I4210088232"]},{"raw_affiliation_string":"5 CIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Madrid, Spain","institution_ids":["https://openalex.org/I2801357902"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053595798","https://openalex.org/A5056138948"],"corresponding_institution_ids":["https://openalex.org/I158438070","https://openalex.org/I2800401438","https://openalex.org/I2801357902","https://openalex.org/I4210088232"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3781,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.80656286,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"31","issue":"17","first_page":"2870","last_page":"2873"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.16859999299049377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.16859999299049377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.11800000071525574,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11684","display_name":"Vibrio bacteria research studies","score":0.11420000344514847,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ion-semiconductor-sequencing","display_name":"Ion semiconductor sequencing","score":0.709550678730011},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5924770832061768},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5923750996589661},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.560543954372406},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.4870946407318115},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.4749974012374878},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4055554270744324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39329397678375244},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3615366816520691},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.3030070662498474},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18728652596473694}],"concepts":[{"id":"https://openalex.org/C164928082","wikidata":"https://www.wikidata.org/wiki/Q6063435","display_name":"Ion semiconductor sequencing","level":4,"score":0.709550678730011},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5924770832061768},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5923750996589661},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.560543954372406},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4870946407318115},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.4749974012374878},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4055554270744324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39329397678375244},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3615366816520691},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3030070662498474},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18728652596473694}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv283","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv283","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2870/49035356/bioinformatics_31_17_2870.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25953799","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25953799","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/17/2870","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/17/2870","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv283","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv283","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2870/49035356/bioinformatics_31_17_2870.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338351","display_name":"FP7 Research Potential of Convergence Regions","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W45443282","https://openalex.org/W1991330646","https://openalex.org/W2010361633","https://openalex.org/W2016577330","https://openalex.org/W2055043387","https://openalex.org/W2089310071","https://openalex.org/W2096093282","https://openalex.org/W2096176621","https://openalex.org/W2101289352","https://openalex.org/W2107282968","https://openalex.org/W2109982529","https://openalex.org/W2117654562","https://openalex.org/W2121139063","https://openalex.org/W2126279129","https://openalex.org/W2127093546","https://openalex.org/W2137617737","https://openalex.org/W2149385299","https://openalex.org/W2158700061","https://openalex.org/W2158804744","https://openalex.org/W2163063322","https://openalex.org/W6601904604"],"related_works":["https://openalex.org/W3031743318","https://openalex.org/W2091383172","https://openalex.org/W2076392095","https://openalex.org/W2293843125","https://openalex.org/W1821627046","https://openalex.org/W2120048439","https://openalex.org/W2225706572","https://openalex.org/W4281696866","https://openalex.org/W2210202376","https://openalex.org/W2041048994"],"abstract_inverted_index":{"UNLABELLED:":[0],"We":[1],"introduce":[2],"IonGAP,":[3],"a":[4,26,55],"publicly":[5],"available":[6,100,118],"Web":[7,103],"platform":[8],"designed":[9],"for":[10,74,104],"the":[11,38,93,102],"analysis":[12,73],"of":[13,28],"whole":[14],"bacterial":[15,33,71],"genomes":[16],"using":[17],"Ion":[18],"Torrent":[19],"sequence":[20],"data.":[21],"Besides":[22],"assembly,":[23],"it":[24],"integrates":[25],"variety":[27],"comparative":[29],"genomics,":[30],"annotation":[31],"and":[32,43,58,77,82,97],"classification":[34],"routines,":[35],"based":[36],"on":[37,101],"widely":[39],"used":[40],"FASTQ,":[41],"BAM":[42],"SRA":[44],"file":[45],"formats.":[46],"Benchmarking":[47],"with":[48],"different":[49],"datasets":[50],"evidenced":[51],"that":[52],"IonGAP":[53,89],"is":[54,90,98],"fast,":[56],"powerful":[57],"simple-to-use":[59],"bioinformatics":[60],"tool.":[61],"By":[62],"releasing":[63],"this":[64],"platform,":[65],"we":[66],"aim":[67],"to":[68],"translate":[69],"low-cost":[70],"genome":[72],"microbiological":[75],"prevention":[76],"control":[78],"in":[79],"healthcare,":[80],"agroalimentary":[81],"pharmaceutical":[83],"industry":[84],"applications.":[85],"AVAILABILITY":[86],"AND":[87],"IMPLEMENTATION:":[88],"hosted":[91],"by":[92],"ITER's":[94],"Teide-HPC":[95],"supercomputer":[96],"freely":[99],"non-commercial":[105],"use":[106],"at":[107,119],"http://iongap.hpc.iter.es.":[108],"CONTACT:":[109],"mcolesan@ull.edu.es":[110],"or":[111],"cflores@ull.edu.es":[112],"SUPPLEMENTARY":[113],"INFORMATION:":[114],"Supplementary":[115],"data":[116],"are":[117],"Bioinformatics":[120],"online.":[121]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
