{"id":"https://openalex.org/W2120545936","doi":"https://doi.org/10.1093/bioinformatics/btv259","title":"Knowledge-driven geospatial location resolution for phylogeographic models of virus migration","display_name":"Knowledge-driven geospatial location resolution for phylogeographic models of virus migration","publication_year":2015,"publication_date":"2015-06-10","ids":{"openalex":"https://openalex.org/W2120545936","doi":"https://doi.org/10.1093/bioinformatics/btv259","mag":"2120545936","pmid":"https://pubmed.ncbi.nlm.nih.gov/26072502"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv259","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i348/49014363/bioinformatics_31_12_i348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i348/49014363/bioinformatics_31_12_i348.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040948702","display_name":"Davy Weissenbacher","orcid":"https://orcid.org/0000-0001-8331-3675"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Davy Weissenbacher","raw_affiliation_strings":["1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038933482","display_name":"Tasnia Tahsin","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tasnia Tahsin","raw_affiliation_strings":["1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111972769","display_name":"R. Suzanne Beard","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel Beard","raw_affiliation_strings":["1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059787033","display_name":"Mari Figaro","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mari Figaro","raw_affiliation_strings":["1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032738234","display_name":"Robert Rivera","orcid":"https://orcid.org/0000-0003-1511-9517"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Rivera","raw_affiliation_strings":["1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050090926","display_name":"Matthew Scotch","orcid":"https://orcid.org/0000-0001-5100-9724"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Scotch","raw_affiliation_strings":["1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022014033","display_name":"Graciela Gonzalez\u2010Hernandez","orcid":"https://orcid.org/0000-0002-6416-9556"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graciela Gonzalez","raw_affiliation_strings":["1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ 85259, USA and 2Center for Environmental Security, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5904, USA","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5040948702"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.404,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.92065835,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"31","issue":"12","first_page":"i348","last_page":"i356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.6171000003814697,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.6171000003814697,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.2386000007390976,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.0272000003606081,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8317434191703796},{"id":"https://openalex.org/keywords/geospatial-analysis","display_name":"Geospatial analysis","score":0.788619875907898},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7002710700035095},{"id":"https://openalex.org/keywords/geospatial-metadata","display_name":"Geospatial metadata","score":0.6634740829467773},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6437950134277344},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6149711012840271},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.5866227746009827},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4716063141822815},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4585554003715515},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27618828415870667},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.25205183029174805},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.24905553460121155},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17110678553581238},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1710541546344757},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.1609310805797577},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10108238458633423}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8317434191703796},{"id":"https://openalex.org/C9770341","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Geospatial analysis","level":2,"score":0.788619875907898},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7002710700035095},{"id":"https://openalex.org/C193150823","wikidata":"https://www.wikidata.org/wiki/Q1477538","display_name":"Geospatial metadata","level":5,"score":0.6634740829467773},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6437950134277344},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6149711012840271},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.5866227746009827},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4716063141822815},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4585554003715515},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27618828415870667},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.25205183029174805},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.24905553460121155},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17110678553581238},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1710541546344757},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.1609310805797577},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10108238458633423},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C136976847","wikidata":"https://www.wikidata.org/wiki/Q6822297","display_name":"Meta Data Services","level":4,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv259","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i348/49014363/bioinformatics_31_12_i348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26072502","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26072502","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3519941","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4542781","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/12/i348","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/12/i348","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv259","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i348/49014363/bioinformatics_31_12_i348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332567","display_name":"Biodesign Institute, Arizona State University","ror":"https://ror.org/03efmqc40"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120545936.pdf","grobid_xml":"https://content.openalex.org/works/W2120545936.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W25480879","https://openalex.org/W60563271","https://openalex.org/W79139011","https://openalex.org/W172861654","https://openalex.org/W189548156","https://openalex.org/W971991238","https://openalex.org/W1555476426","https://openalex.org/W1986353013","https://openalex.org/W1995111176","https://openalex.org/W2015570541","https://openalex.org/W2032115636","https://openalex.org/W2033673704","https://openalex.org/W2039955401","https://openalex.org/W2046913053","https://openalex.org/W2050824831","https://openalex.org/W2077267646","https://openalex.org/W2121318769","https://openalex.org/W2122496795","https://openalex.org/W2141099517","https://openalex.org/W2156804059","https://openalex.org/W2162407175","https://openalex.org/W2215206286","https://openalex.org/W2250232417","https://openalex.org/W2527268310","https://openalex.org/W2753318643","https://openalex.org/W2923652028","https://openalex.org/W4230606671","https://openalex.org/W4248231884","https://openalex.org/W6601034432","https://openalex.org/W6602515118","https://openalex.org/W6603236941","https://openalex.org/W6607803572","https://openalex.org/W6648984901","https://openalex.org/W6658918688","https://openalex.org/W6681095162","https://openalex.org/W6691503590","https://openalex.org/W6982054360"],"related_works":["https://openalex.org/W2373398412","https://openalex.org/W2374379029","https://openalex.org/W2357597986","https://openalex.org/W2351854916","https://openalex.org/W2389827836","https://openalex.org/W2359241271","https://openalex.org/W4251339169","https://openalex.org/W1980255893","https://openalex.org/W1503116306","https://openalex.org/W1029779541"],"abstract_inverted_index":{"UNLABELLED:":[0],"Diseases":[1],"caused":[2],"by":[3,63,219],"zoonotic":[4,48],"viruses":[5,49],"(viruses":[6],"transmittable":[7],"between":[8],"humans":[9],"and":[10,26,70,112,157,174,189],"animals)":[11],"are":[12],"a":[13,34,84,94,108,134,151,154,158,168,208,235],"major":[14],"threat":[15],"to":[16,92,121,142,238],"public":[17,65],"health":[18],"throughout":[19],"the":[20,29,52,72,76,90,98,123,182,198,212,221],"world.":[21],"By":[22,225],"studying":[23],"virus":[24],"migration":[25],"mutation":[27],"patterns,":[28],"field":[30],"of":[31,47,55,97,114,125,138,200,214,245],"phylogeography":[32,143],"provides":[33],"valuable":[35],"tool":[36],"for":[37,89,110,147],"improving":[38,220,226],"their":[39],"surveillance.":[40],"A":[41],"key":[42],"component":[43],"in":[44,75,118,211],"phylogeographic":[45],"analysis":[46,205],"involves":[50],"identifying":[51],"specific":[53],"locations":[54,115],"relevant":[56],"viral":[57],"sequences.":[58,247],"This":[59],"is":[60,81,88,217],"usually":[61],"accomplished":[62],"querying":[64],"databases":[66],"such":[67],"as":[68],"GenBank":[69,165,246],"examining":[71,196],"geospatial":[73,222,243],"metadata":[74,166,183,244],"record.":[77],"When":[78],"sufficient":[79,126],"detail":[80],"not":[82],"available,":[83],"logical":[85],"next":[86],"step":[87],"researcher":[91],"conduct":[93],"manual":[95],"survey":[96],"corresponding":[99],"published":[100],"articles.":[101],"MOTIVATION:":[102],"In":[103],"this":[104],"article,":[105],"we":[106],"present":[107],"system":[109,129,178,232],"detection":[111],"disambiguation":[113,149,199],"(toponym":[116],"resolution)":[117],"full-text":[119],"articles":[120,140],"automate":[122],"retrieval":[124],"metadata.":[127],"Our":[128,203],"has":[130],"been":[131],"tested":[132],"on":[133,242],"manually":[135],"annotated":[136],"corpus":[137],"journal":[139],"related":[141],"using":[144,181],"integrated":[145],"heuristics":[146],"location":[148,201,223],"including":[150],"distance":[152],"heuristic,":[153],"population":[155],"heuristic":[156,160,184],"novel":[159],"utilizing":[161],"knowledge":[162],"obtained":[163],"from":[164],"(i.e.":[167],"'metadata":[169],"heuristic').":[170],"RESULTS:":[171],"For":[172],"detecting":[173],"disambiguating":[175],"locations,":[176],"our":[177,231],"performed":[179],"best":[180],"(0.54":[185],"Precision,":[186],"0.89":[187],"Recall":[188],"0.68":[190],"F-score).":[191],"Precision":[192],"reaches":[193],"0.88":[194],"when":[195],"only":[197],"names.":[202],"error":[204],"showed":[206],"that":[207,240],"noticeable":[209],"increase":[210],"accuracy":[213],"toponym":[215],"resolution":[216],"possible":[218],"detection.":[224],"these":[227],"fundamental":[228],"automated":[229],"tasks,":[230],"can":[233],"be":[234],"useful":[236],"resource":[237],"phylogeographers":[239],"rely":[241],".":[248]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
