{"id":"https://openalex.org/W2142955026","doi":"https://doi.org/10.1093/bioinformatics/btv237","title":"MeSHLabeler: improving the accuracy of large-scale MeSH indexing by integrating diverse evidence","display_name":"MeSHLabeler: improving the accuracy of large-scale MeSH indexing by integrating diverse evidence","publication_year":2015,"publication_date":"2015-06-10","ids":{"openalex":"https://openalex.org/W2142955026","doi":"https://doi.org/10.1093/bioinformatics/btv237","mag":"2142955026","pmid":"https://pubmed.ncbi.nlm.nih.gov/26072501"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv237","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv237","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i339/49014367/bioinformatics_31_12_i339.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i339/49014367/bioinformatics_31_12_i339.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100349838","display_name":"Ke Liu","orcid":"https://orcid.org/0000-0002-0505-920X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN","JP","US"],"is_corresponding":false,"raw_author_name":"Ke Liu","raw_affiliation_strings":["1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I157725225","https://openalex.org/I22299242","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102196120","display_name":"Shengwen Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN","JP","US"],"is_corresponding":false,"raw_author_name":"Shengwen Peng","raw_affiliation_strings":["1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I157725225","https://openalex.org/I22299242","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023261891","display_name":"Junqiu Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN","JP","US"],"is_corresponding":false,"raw_author_name":"Junqiu Wu","raw_affiliation_strings":["1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I157725225","https://openalex.org/I22299242","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028518494","display_name":"ChengXiang Zhai","orcid":"https://orcid.org/0000-0002-6434-3702"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN","JP","US"],"is_corresponding":false,"raw_author_name":"Chengxiang Zhai","raw_affiliation_strings":["1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I157725225","https://openalex.org/I22299242","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059001924","display_name":"Hiroshi Mamitsuka","orcid":"https://orcid.org/0000-0002-6607-5617"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN","JP","US"],"is_corresponding":false,"raw_author_name":"Hiroshi Mamitsuka","raw_affiliation_strings":["1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I157725225","https://openalex.org/I22299242","https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045866167","display_name":"Shanfeng Zhu","orcid":"https://orcid.org/0000-0002-6067-5312"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN","JP","US"],"is_corresponding":false,"raw_author_name":"Shanfeng Zhu","raw_affiliation_strings":["1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and 2Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China, 3School of Information Science & Engineering, Central South University, Changsha 410083, China, 4Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, 5Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan and 6Center for Computational System Biology, Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I157725225","https://openalex.org/I22299242","https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.9588,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.96140687,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"31","issue":"12","first_page":"i339","last_page":"i347"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8373000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8373000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.023399999365210533,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10102","display_name":"scientometrics and bibliometrics research","score":0.01600000075995922,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8072375059127808},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.784095048904419},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7626821994781494},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5545759797096252},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5280174612998962},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.516072690486908},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5013201236724854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46261316537857056},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4212595522403717},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41459816694259644},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34008312225341797},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.07575482130050659},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06789976358413696}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8072375059127808},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.784095048904419},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7626821994781494},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5545759797096252},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5280174612998962},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.516072690486908},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5013201236724854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46261316537857056},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4212595522403717},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41459816694259644},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34008312225341797},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07575482130050659},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06789976358413696},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btv237","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv237","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i339/49014367/bioinformatics_31_12_i339.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26072501","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26072501","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:irdb.nii.ac.jp:01221:0000174242","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/218461","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/12/i339","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/12/i339","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4765864","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4765864","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv237","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv237","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/12/i339/49014367/bioinformatics_31_12_i339.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1905021445","display_name":"MHC II\u7c7b\u5206\u5b50\u4eb2\u548c\u80bd\u7684\u9ad8\u7cbe\u5ea6\u9884\u6d4b\u7814\u7a76","funder_award_id":"61170097","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7862711421","display_name":"Estimating data structure embedded in semi-structured data","funder_award_id":"24300054","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8757246742","display_name":"\u9762\u5411\u8001\u5e74\u4eba\u5065\u5eb7\u7684\u975e\u5e72\u9884\u5f0f\u611f\u77e5\u4e0e\u6301\u7eed\u8ba1\u7b97\u7814\u7a76","funder_award_id":"61332013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332222","display_name":"University of Illinois at Urbana-Champaign","ror":"https://ror.org/047426m28"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142955026.pdf","grobid_xml":"https://content.openalex.org/works/W2142955026.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W74342042","https://openalex.org/W174753650","https://openalex.org/W1973435495","https://openalex.org/W2025103722","https://openalex.org/W2041005615","https://openalex.org/W2044986849","https://openalex.org/W2057803903","https://openalex.org/W2058907739","https://openalex.org/W2061172803","https://openalex.org/W2088339844","https://openalex.org/W2089941494","https://openalex.org/W2096525273","https://openalex.org/W2101478855","https://openalex.org/W2114315281","https://openalex.org/W2114370860","https://openalex.org/W2115024484","https://openalex.org/W2115584760","https://openalex.org/W2118585731","https://openalex.org/W2122402213","https://openalex.org/W2129144539","https://openalex.org/W2132220874","https://openalex.org/W2152143870","https://openalex.org/W2153635508","https://openalex.org/W2160171761","https://openalex.org/W2168022112","https://openalex.org/W2182889308","https://openalex.org/W2296751301","https://openalex.org/W2394935951","https://openalex.org/W2398645150","https://openalex.org/W2400171164","https://openalex.org/W2403452307","https://openalex.org/W2405141887","https://openalex.org/W4237629094","https://openalex.org/W4302313152","https://openalex.org/W6607080078","https://openalex.org/W6677656871","https://openalex.org/W6683709678","https://openalex.org/W6685626308"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W3024364549","https://openalex.org/W2591697403"],"abstract_inverted_index":{"MOTIVATION:":[0],"Medical":[1,48],"Subject":[2],"Headings":[3],"(MeSHs)":[4],"are":[5,149],"used":[6,81],"by":[7,73,112,191,206],"National":[8],"Library":[9],"of":[10,25,39,68,177,185],"Medicine":[11],"(NLM)":[12],"to":[13,104,115,163],"index":[14],"almost":[15],"all":[16],"citations":[17,189],"in":[18,174],"MEDLINE,":[19],"which":[20,56],"greatly":[21],"facilitates":[22],"the":[23,34,129,165,171,182,192],"applications":[24],"biomedical":[26],"information":[27],"retrieval":[28],"and":[29,36,63,128,142],"text":[30],"mining.":[31],"To":[32,151],"reduce":[33],"time":[35],"financial":[37],"cost":[38],"manual":[40],"annotation,":[41,55],"NLM":[42],"has":[43],"developed":[44,157],"a":[45,100],"software":[46,212],"package,":[47],"Text":[49],"Indexer":[50],"(MTI),":[51],"for":[52,82,94,108,187],"assisting":[53],"MeSH":[54,74,84,95,110,122,133,137],"uses":[57],"k-nearest":[58],"neighbors":[59],"(KNN),":[60],"pattern":[61,125],"matching":[62],"indexing":[64],"rules.":[65],"Other":[66],"types":[67],"information,":[69],"such":[70],"as":[71],"prediction":[72,144,166],"classifiers":[75,148],"(trained":[76],"separately),":[77],"can":[78],"also":[79],"be":[80],"automatic":[83],"annotation.":[85,96],"However,":[86],"existing":[87],"methods":[88],"cannot":[89],"effectively":[90],"integrate":[91,105],"multiple":[92,106],"evidence":[93,107],"METHODS:":[97],"We":[98],"propose":[99],"novel":[101],"framework,":[102],"MeSHLabeler,":[103],"accurate":[109],"annotation":[111],"using":[113],"'learning":[114],"rank'.":[116],"Evidence":[117],"includes":[118],"numerous":[119],"predictions":[120],"from":[121,146],"classifiers,":[123],"KNN,":[124],"matching,":[126],"MTI":[127],"correlation":[130],"between":[131],"different":[132,147],"terms,":[134],"etc.":[135],"Each":[136],"classifier":[138],"is":[139,199,213],"trained":[140],"independently,":[141],"thus":[143],"scores":[145],"incomparable.":[150],"address":[152],"this":[153,197],"issue,":[154],"we":[155],"have":[156],"an":[158],"effective":[159],"score":[160],"normalization":[161],"procedure":[162],"improve":[164],"accuracy.":[167],"RESULTS:":[168],"MeSHLabeler":[169],"won":[170],"first":[172],"place":[173],"Task":[175],"2A":[176],"2014":[178],"BioASQ":[179,193],"challenge,":[180],"achieving":[181],"Micro":[183],"F-measure":[184],"0.6248":[186],"9,040":[188],"provided":[190],"challenge.":[194],"Note":[195],"that":[196],"accuracy":[198],"around":[200],"9.15%":[201],"higher":[202],"than":[203],"0.5724,":[204],"obtained":[205],"MTI.":[207],"AVAILABILITY":[208],"AND":[209],"IMPLEMENTATION:":[210],"The":[211],"available":[214],"upon":[215],"request.":[216]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
