{"id":"https://openalex.org/W2094848329","doi":"https://doi.org/10.1093/bioinformatics/btv220","title":"Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data","display_name":"Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data","publication_year":2015,"publication_date":"2015-04-24","ids":{"openalex":"https://openalex.org/W2094848329","doi":"https://doi.org/10.1093/bioinformatics/btv220","mag":"2094848329","pmid":"https://pubmed.ncbi.nlm.nih.gov/25910695"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv220","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2822/49035606/bioinformatics_31_17_2822.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2822/49035606/bioinformatics_31_17_2822.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042620584","display_name":"Ellis Patrick","orcid":"https://orcid.org/0000-0002-5253-4747"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ellis Patrick","raw_affiliation_strings":["1 School of Mathematics and Statistics, University of Sydney, Sydney, NSW 2006, Australia,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, University of Sydney, Sydney, NSW 2006, Australia,","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089660173","display_name":"Michael Buckley","orcid":"https://orcid.org/0000-0002-7529-6112"},"institutions":[{"id":"https://openalex.org/I4210154771","display_name":"CSIRO Manufacturing","ror":"https://ror.org/04sx9wp33","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210154771","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Michael Buckley","raw_affiliation_strings":["2 CSIRO Mathematical & Information Sciences, Clayton South, VIC 3168, Australia and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 CSIRO Mathematical & Information Sciences, Clayton South, VIC 3168, Australia and","institution_ids":["https://openalex.org/I4210154771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047479105","display_name":"Samuel M\u00fcller","orcid":"https://orcid.org/0000-0002-3087-8127"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Samuel M\u00fcller","raw_affiliation_strings":["1 School of Mathematics and Statistics, University of Sydney, Sydney, NSW 2006, Australia,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, University of Sydney, Sydney, NSW 2006, Australia,","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059110935","display_name":"David Lin","orcid":"https://orcid.org/0000-0002-9236-8405"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David M. Lin","raw_affiliation_strings":["3 Department of Biomedical Sciences, Cornell University, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Biomedical Sciences, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028524705","display_name":"Jean Yang","orcid":"https://orcid.org/0000-0002-5271-2603"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jean Y. H. Yang","raw_affiliation_strings":["1 School of Mathematics and Statistics, University of Sydney, Sydney, NSW 2006, Australia,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, University of Sydney, Sydney, NSW 2006, Australia,","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028524705"],"corresponding_institution_ids":["https://openalex.org/I129604602"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.308,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56658405,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"31","issue":"17","first_page":"2822","last_page":"2828"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8407999873161316,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8407999873161316,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.03610000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.023399999365210533,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7068639397621155},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.571128785610199},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5574392676353455},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5567231774330139},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5357187390327454},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4757925271987915},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.46229928731918335},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38971415162086487},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31328126788139343},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27673959732055664},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16625550389289856}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7068639397621155},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.571128785610199},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5574392676353455},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5567231774330139},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5357187390327454},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4757925271987915},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.46229928731918335},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38971415162086487},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31328126788139343},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27673959732055664},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16625550389289856}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv220","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2822/49035606/bioinformatics_31_17_2822.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25910695","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25910695","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4635654","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4635654","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/17/2822","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/17/2822","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv220","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/17/2822/49035606/bioinformatics_31_17_2822.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G7669921127","display_name":null,"funder_award_id":"5R21AG033241","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"}],"funders":[{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2094848329.pdf"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W90717712","https://openalex.org/W1555797395","https://openalex.org/W1928655587","https://openalex.org/W1965551706","https://openalex.org/W1972898510","https://openalex.org/W1981582641","https://openalex.org/W1983014406","https://openalex.org/W1991160835","https://openalex.org/W1999241380","https://openalex.org/W2008929650","https://openalex.org/W2048338070","https://openalex.org/W2050869737","https://openalex.org/W2051126106","https://openalex.org/W2054244815","https://openalex.org/W2059330780","https://openalex.org/W2063703350","https://openalex.org/W2064703543","https://openalex.org/W2065569210","https://openalex.org/W2070571588","https://openalex.org/W2071746095","https://openalex.org/W2073764144","https://openalex.org/W2083381199","https://openalex.org/W2099573844","https://openalex.org/W2109761160","https://openalex.org/W2110065044","https://openalex.org/W2117513900","https://openalex.org/W2122683221","https://openalex.org/W2128219894","https://openalex.org/W2130410032","https://openalex.org/W2148242912","https://openalex.org/W2155874171","https://openalex.org/W2159482845","https://openalex.org/W2166240615","https://openalex.org/W2171304795","https://openalex.org/W2171698535","https://openalex.org/W4253631965","https://openalex.org/W4294216483","https://openalex.org/W6663475876"],"related_works":["https://openalex.org/W1892467659","https://openalex.org/W1529400504","https://openalex.org/W2998403542","https://openalex.org/W2808586768","https://openalex.org/W2329791227","https://openalex.org/W4296285654","https://openalex.org/W3026316512","https://openalex.org/W4311728217","https://openalex.org/W1742055567","https://openalex.org/W4385825249"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1,123],"practice,":[2],"identifying":[3],"and":[4,15,25,53,75,101,108,128],"interpreting":[5],"the":[6,10,30,90,95,106,139,159,174],"functional":[7,56],"impacts":[8,57],"of":[9,22,32,45,63,110,136],"regulatory":[11,51],"relationships":[12],"between":[13],"micro-RNA":[14,24,52,71,99,111,140],"messenger-RNA":[16,26],"is":[17,72,156,166],"non-trivial.":[18],"The":[19],"sheer":[20],"scale":[21],"possible":[23],"interactions":[27],"can":[28],"make":[29],"interpretation":[31],"results":[33],"difficult.":[34],"RESULTS:":[35],"We":[36,93],"propose":[37],"a":[38,61,70,83,134],"supervised":[39],"framework,":[40],"pMim,":[41,143,172],"built":[42],"upon":[43],"concepts":[44],"significance":[46],"combination,":[47],"for":[48,117],"jointly":[49],"ranking":[50],"their":[54],"potential":[55],"with":[58,119,154],"respect":[59],"to":[60,104,125,146],"condition":[62],"interest.":[64],"Here,":[65],"pMim":[66],"directly":[67],"tests":[68],"if":[69,76],"differentially":[73],"expressed":[74],"its":[77],"predicted":[78],"targets,":[79],"which":[80],"lie":[81],"in":[82,89,133,144,158,173],"common":[84],"biological":[85],"pathway,":[86],"have":[87],"changed":[88],"opposite":[91],"direction.":[92],"leverage":[94],"information":[96],"within":[97],"existing":[98,148],"target":[100],"pathway":[102],"databases":[103],"stabilize":[105],"estimation":[107],"annotation":[109],"regulation":[112],"making":[113],"our":[114],"approach":[115],"suitable":[116],"datasets":[118,137],"small":[120],"sample":[121],"sizes.":[122],"addition":[124],"outputting":[126],"meaningful":[127],"interpretable":[129],"results,":[130],"we":[131],"demonstrate":[132],"variety":[135],"that":[138],"identified":[141],"by":[142],"comparison":[145],"simpler":[147],"approaches,":[149],"are":[150,186],"also":[151],"more":[152],"concordant":[153],"what":[155],"described":[157],"literature.":[160],"AVAILABILITY":[161],"AND":[162],"IMPLEMENTATION:":[163],"This":[164],"framework":[165],"implemented":[167],"as":[168],"an":[169],"R":[170],"function,":[171],"package":[175],"sydSeq":[176],"available":[177,187],"from":[178],"http://www.ellispatrick.com/r-packages.":[179],"CONTACT:":[180],"jean.yang@sydney.edu.au":[181],"SUPPLEMENTARY":[182],"INFORMATION:":[183],"Supplementary":[184],"data":[185],"at":[188],"Bioinformatics":[189],"online.":[190]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
