{"id":"https://openalex.org/W2153079256","doi":"https://doi.org/10.1093/bioinformatics/btv207","title":"Message from the ISCB: ISMB/ECCB Rebooted: 2015 Brings Major Update to the Conference Program","display_name":"Message from the ISCB: ISMB/ECCB Rebooted: 2015 Brings Major Update to the Conference Program","publication_year":2015,"publication_date":"2015-05-05","ids":{"openalex":"https://openalex.org/W2153079256","doi":"https://doi.org/10.1093/bioinformatics/btv207","mag":"2153079256"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1878/7087557/btv207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1878/7087557/btv207.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020554776","display_name":"Christiana N. Fogg","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109214","display_name":"International Society for Computational Biology","ror":"https://ror.org/01jv71z12","country_code":"US","type":"other","lineage":["https://openalex.org/I4210109214"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christiana N. Fogg","raw_affiliation_strings":["1 Freelance Science Writer, Kensington, MD and 2 Executive Director, International Society for Computational Biology, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Freelance Science Writer, Kensington, MD and 2 Executive Director, International Society for Computational Biology, La Jolla, CA","institution_ids":["https://openalex.org/I4210109214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059155302","display_name":"Diane E. Kovats","orcid":"https://orcid.org/0000-0003-0896-1642"},"institutions":[{"id":"https://openalex.org/I4210109214","display_name":"International Society for Computational Biology","ror":"https://ror.org/01jv71z12","country_code":"US","type":"other","lineage":["https://openalex.org/I4210109214"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Diane E. Kovats","raw_affiliation_strings":["1 Freelance Science Writer, Kensington, MD and 2 Executive Director, International Society for Computational Biology, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Freelance Science Writer, Kensington, MD and 2 Executive Director, International Society for Computational Biology, La Jolla, CA","institution_ids":["https://openalex.org/I4210109214"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210109214"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.10267064,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"31","issue":"11","first_page":"1878","last_page":"1879"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13607","display_name":"Academic Publishing and Open Access","score":0.07850000262260437,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13607","display_name":"Academic Publishing and Open Access","score":0.07850000262260437,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11492","display_name":"Academic integrity and plagiarism","score":0.011599999852478504,"subfield":{"id":"https://openalex.org/subfields/3311","display_name":"Safety Research"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13123","display_name":"Advances in Oncology and Radiotherapy","score":0.010900000110268593,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6182973384857178},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4948572516441345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22551938891410828}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6182973384857178},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4948572516441345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22551938891410828}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btv207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1878/7087557/btv207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/11/1878","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/11/1878","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1878/7087557/btv207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"The":[0,50,70,382,446,509,573,687],"23rd":[1],"Annual":[2,575],"International":[3,64],"Conference":[4,15,188,579],"on":[5,16,480,673,863,988,994],"Intelligent":[6],"Systems":[7],"for":[8,43,66,144,264,323,357,513,528,536,607,702,722,743,827,869,898,927],"Molecular":[9,358,403,414],"Biology":[10,18,68,404,415,589],"and":[11,33,47,57,85,112,130,194,197,205,216,275,298,311,361,439,471,484,492,517,524,542,585,614,643,648,706,710,735,740,752,778,793,817,830,841,882,917,954,981,996,1004,1020,1028,1040,1057,1079,1097],"the":[12,36,59,63,76,92,116,120,137,166,171,198,202,230,269,281,314,346,353,365,372,374,388,399,412,420,461,478,490,497,615,626,633,640,645,649,660,682,732,825,831,835,928,934,973,977,998,1072,1075],"14th":[13],"European":[14,413],"Computational":[17,67,555],"(ISMB/ECCB":[19],"2015)":[20],"is":[21,54,58,224,839,894,986],"shaping":[22],"up":[23,207,378],"to":[24,41,126,150,228,300,477,520,540,610,695,719,728,760,764,802,879,949,958,965,1001,1014,1053,1086],"be":[25,158,177,664,1011,1087],"a":[26,44,96,180,234,534,619,630,674,865,895,959,967,1006,1015],"phenomenal":[27],"meeting":[28,61,71,121,282,499],"with":[29,136,208,659,972,1094],"world-renowned":[30],"keynote":[31,375],"speakers":[32,383],"changes":[34],"in":[35,95,160,165,179,371,655,681,775,845,884,905,1026,1047,1071],"conference":[37,53,199,448,479,1084],"format":[38],"that":[39,239,279,287,295,494,782,795,1031],"aim":[40,759],"make":[42],"more":[45,283],"streamlined":[46],"user-friendly":[48],"conference.":[49],"joint":[51],"ISMB/ECCB":[52,182,465,1062,1093],"held":[55],"biennially":[56],"flagship":[60],"of":[62,99,185,222,237,316,331,337,345,352,364,367,387,391,398,402,411,419,425,436,442,463,561,639,652,684,691,731,738,770,785,847,914,1012,1092],"Society":[65],"(ISCB).":[69],"will":[72,86,157,176,250,257,272,285,312,474,531,624,663,716,823,857,1010,1024,1044,1064],"take":[73,729],"place":[74,451],"at":[75,119,1099],"Convention":[77],"Center":[78],"Dublin,":[79],"Ireland":[80],"from":[81,90,318,452,636],"July":[82,454,458,482,486,515],"10\u201314,":[83],"2015":[84,153,558,1063],"bring":[87],"together":[88],"scientists":[89,304],"across":[91,253,912],"globe":[93],"working":[94],"broad":[97,161],"range":[98],"computational":[100,242],"biology-related":[101],"disciplines":[102],"including":[103],"genomics,":[104],"structural":[105],"biology,":[106],"proteomics,":[107],"data":[108,700,704,813,828,850,872,885],"mining,":[109],"machine":[110],"learning":[111],"systems":[113],"biology.":[114,900],"In":[115,152,460,755,819],"past,":[117,167,373],"presentations":[118,156,317,1070],"have":[122,289,305,548],"been":[123,306,549],"organized":[124],"according":[125],"tracks:":[127],"Proceedings,":[128],"Highlights":[129],"Late":[131],"Breaking":[132],"Research":[133],"tracks.":[134],"Combined":[135],"multiple":[138],"track":[139,175],"presentation,":[140],"this":[141,713,756,820,984],"caused":[142],"frustration":[143],"attendees":[145,274,288],"when":[146],"choosing":[147],"which":[148,1048],"sessions":[149,294,507,1030],"attend.":[151],"all":[154,241,939],"oral":[155],"presented":[159],"theme":[162,210,309,325],"areas.":[163],"As":[164,370],"submissions":[168],"accepted":[169],"into":[170],"highly":[172],"selective":[173],"Proceedings":[174,183],"published":[178],"special":[181,1067],"issue":[184],"Bioinformatics":[186,392,553,576,749],".":[187],"co-chairs":[189],"Alex":[190],"Bateman,":[191],"Janet":[192,335],"Kelso":[193,267,336],"Desmond":[195],"Higgins":[196],"committee":[200],"undertook":[201],"reorganization":[203],"effort":[204],"came":[206],"five":[209],"areas:":[211],"Genes,":[212],"Proteins,":[213],"Systems,":[214],"Disease":[215],"Data.":[217],"Batemen":[218],"said,":[219,276],"\u2018The":[220],"idea":[221],"themes":[223,238],"an":[225,290,762,1088],"obvious":[226],"way":[227],"organize":[229,313],"talks.":[231],"But,":[232],"selecting":[233],"small":[235],"number":[236],"represented":[240],"biology":[243],"was":[244],"challenging.":[245],"Of":[246],"course":[247],"many":[248],"talks":[249],"potentially":[251],"fit":[252],"several":[254],"themes.":[255],"Time":[256],"tell":[258],"whether":[259],"these":[260,786],"need":[261],"any":[262],"tweaking":[263],"future":[265],"meetings\u2019.":[266],"believes":[268],"new":[270,791,798],"organization":[271],"benefit":[273],"\u2018We":[277],"hope":[278,781],"organizing":[280],"thematically":[284],"mean":[286],"easier":[291],"time":[292],"identifying":[293],"are":[296,328,500,511,518,909],"relevant":[297],"interesting":[299,790],"them\u2019.":[301],"Five":[302],"leading":[303],"named":[307],"as":[308,618],"chairs":[310],"selection":[315],"each":[319,324],"traditional":[320],"submission":[321],"cateogry":[322],"area.":[326],"They":[327],"Yana":[329],"Bromberg":[330],"Rutgers":[332],"University":[333,366,438,443],"(Disease),":[334],"Max":[338,354],"Planck":[339,355],"Institute":[340,348,356,390],"(Data),":[341],"Nicolas":[342],"Le":[343],"Novere":[344],"Babraham":[347],"(Systems),":[349],"Martin":[350],"Vingron":[351],"Genetics":[359],"(Genes)":[360],"Ioannis":[362],"Xenarios":[363],"Lausanne":[368],"(Proteins).":[369],"speaker":[376],"line":[377],"features":[379],"world-class":[380],"scientists.":[381],"include":[384,1066],"Amos":[385],"Bairoch":[386],"Swiss":[389],"(ISCB":[393],"Fellows":[394],"Keynote),":[395],"Cyrus":[396],"Chothia":[397],"MRC":[400],"Laboratory":[401],"(Senior":[405],"Scientist":[406],"Award":[407],"winner),":[408,430],"Eileen":[409],"Furlong":[410],"Laboratory,":[416],"Curtis":[417],"Huttenhower":[418],"Harvard":[421],"T.H.":[422],"Chan":[423],"School":[424],"Public":[426],"Health":[427],"(Overton":[428],"Prize":[429],"2013":[431],"Nobel":[432],"Laureate":[433],"Michael":[434],"Levitt":[435],"Stanford":[437],"Kenneth":[440],"Wolfe":[441],"College":[444],"Dublin.":[445],"main":[447,498],"program":[449],"takes":[450],"Sunday,":[453],"12":[455],"through":[456],"Tuesday,":[457],"14.":[459],"tradition":[462],"previous":[464],"meetings,":[466],"Special":[467,595],"Interest":[468,596],"Group":[469,597],"(SIGs)":[470],"Satellite":[472],"Meetings":[473],"occur":[475],"prior":[476],"Thursday,":[481],"10":[483],"Friday,":[485],"11.":[487],"This":[488,622,920,1008,1082],"year,":[489],"tutorials":[491],"workshops":[493],"usually":[495],"precede":[496],"being":[501],"replaced":[502],"by":[503,946],"applied":[504],"knowledge":[505,525],"exchange":[506,526,543],"(AKES).":[508],"AKES":[510,530,547,601,666,747,806,874,962],"scheduled":[512],"Saturday,":[514],"11":[516],"designed":[519],"provide":[521,533,693,1045],"interactive":[522],"educational":[523],"opportunities":[527],"attendees.":[529],"also":[532,858,1065],"chance":[535],"junior":[537,1021],"principle":[538],"investigators":[539],"meet":[541],"career":[544,969,989],"advice.":[545],"Six":[546],"scheduled:":[550],"3Dsig:":[551],"Structural":[552],"&":[554],"Biophysics":[556],"CAMDA":[557],"Critical":[559],"Assessment":[560],"Massive":[562],"Data":[563],"Analysis":[564],"Automated":[565],"Function":[566],"Prediction":[567],"(AFP-SIG)":[568],"Bio-Ontologies":[569],"BioVis":[570],"SIG":[571,590,592,600],"BOSC:":[572],"16th":[574],"Open":[577],"Source":[578],"HitSEQ:":[580],"High":[581],"Throughput":[582],"Sequencing":[583],"Algorithms":[584],"Applications":[586],"Integrative":[587],"RNA":[588],"NetBio":[591],"Regulatory":[593],"Genomics":[594],"(RegGenSIG)":[598],"VarI":[599],"01:":[602],"Applied":[603],"Knowledge":[604],"Building":[605],"networks":[606],"translation:":[608],"how":[609,718,923],"use":[611,745],"DREAM":[612,631,653],"challenges":[613],"Synapse":[616,661],"platform":[617,662],"research":[620,799],"strategy":[621],"session":[623,985,1009],"explain":[625],"rationale":[627],"behind":[628],"running":[629],"Challenge,":[632],"steps":[634],"involved":[635],"both":[637],"sides":[638],"process":[641],"(organizers":[642],"participants),":[644],"lessons":[646],"learned,":[647],"potential":[650],"uses":[651],"Challenges":[654],"education.":[656],"Hands-on":[657],"exercises":[658],"featured.":[665],"02:":[667],"Cytoscape":[668,739],"3":[669],"App":[670],"Development:":[671],"Variations":[672],"theme\u2014\u2018Hello":[675],"World\u2019":[676],"Cytoscape's":[677],"real":[678],"power":[679],"lies":[680],"ecosystem":[683],"community-developed":[685],"apps.":[686],"most":[688],"common":[689],"types":[690,913],"apps":[692,721],"access":[694],"third-party":[696],"biological":[697,877],"databases,":[698],"customize":[699],"import":[701],"domain-specific":[703],"sets,":[705],"perform":[707],"custom":[708,744],"analyses":[709,818],"workflows.":[711],"During":[712],"workshop,":[714,757,821],"we":[715,758,822,992],"demonstrate":[717],"develop":[720,955],"Cytoscape,":[723],"targeting":[724],"individuals":[725],"who":[726],"want":[727],"advantage":[730],"network":[733],"visualization":[734],"analysis":[736],"capabilities":[737],"extend":[741],"it":[742,1043],"cases.":[746],"03:":[748],"software":[750,767],"testing":[751],"quality":[753,804],"assurance":[754],"create":[761],"environment":[763],"engage":[765],"bioinformatics":[766,803,890,968,999],"developers,":[768],"managers":[769],"bioinformatics/genomic":[771],"core":[772],"facilities,":[773],"researchers":[774],"reliability":[776],"engineering":[777],"statisticians.":[779],"We":[780,856],"cross":[783],"pollination":[784],"fields":[787],"would":[788,796],"yield":[789],"insight":[792],"ideas":[794],"open":[797,852],"avenue":[800],"related":[801],"assurance.":[805],"04:":[807],"Open-access,":[808],"cloud-based,":[809],"individual-level":[810],"clinical":[811,848,870],"trials":[812,849,871],"-":[814],"sharing,":[815],"dissemination":[816],"discuss":[824],"reasons":[826],"sharing":[829,838],"issues":[832],"surrounding":[833],"it,":[834],"various":[836],"ways":[837,1046],"implemented,":[840],"showcase":[842],"our":[843,860],"experience":[844],"re-analysis":[846],"using":[851],"immunology":[853],"studies":[854],"data.":[855],"highlight":[859],"initial":[861],"work":[862],"defining":[864],"minimum":[866],"information":[867],"guideline":[868],"release.":[873],"05:":[875],"Using":[876],"cyberinfrastructure":[878],"scale":[880],"science":[881,931,1096],"people\u2014Applications":[883],"storage,":[886],"HPC,":[887],"cloud":[888],"analysisand":[889],"training":[891,995],"Cyberinfrastructure":[892],"(CI)":[893],"powerful":[896],"enabler":[897],"data-intensive":[899],"Although":[901],"much":[902],"investigation":[903],"originates":[904],"organism-centered":[906],"communities":[907,948],"there":[908],"unifying":[910],"similarities":[911],"datasets,":[915],"algorithms":[916],"overall":[918],"goals.":[919],"workshop":[921],"demonstrates":[922],"CI":[924,952],"originally":[925],"developed":[926],"U.S.":[929],"plant":[930],"community":[932],"(via.":[933],"iPlant":[935],"Collaborative":[936],"project)":[937],"serves":[938],"life":[940],"sciences":[941],"(animals,":[942],"plants,":[943],"microbes,":[944],"etc.)":[945],"allowing":[947],"leverage":[950],"pre-built":[951],"solutions":[953],"application-specific":[956],"components":[957],"customized":[960],"endpoint.":[961],"06:":[963],"How":[964],"navigate":[966],"path":[970],"Working":[971],"ISCB":[974],"student":[975],"council,":[976],"Junior":[978],"PI":[979],"group":[980],"COBE":[982],"COSI,":[983],"focused":[987],"development.":[990],"Here,":[991],"focus":[993],"preparing":[997],"professional":[1000],"successfully":[1002],"launch":[1003],"build":[1005,1034],"career.":[1007,1036,1061],"interest":[1013],"wide":[1016],"audience.":[1017],"For":[1018,1037],"students":[1019,1056],"PIs,":[1022],"you":[1023,1049],"participate":[1025],"topics":[1027],"practical":[1029],"can":[1032,1050],"help":[1033],"your":[1035,1055],"senior":[1038],"faculty":[1039],"other":[1041],"professionals,":[1042],"improve":[1051],"skills":[1052],"mentor":[1054],"professionals":[1058],"building":[1059],"their":[1060],"sessions,":[1068],"poster":[1069],"exhibit":[1073],"hall,":[1074],"Student":[1076],"Council":[1077],"Symposium":[1078],"social":[1080],"activities.":[1081],"year\u2019s":[1083],"promises":[1085],"eagerly":[1089],"anticipated":[1090],"reboot":[1091],"great":[1095],"collaboration":[1098],"its":[1100],"core.":[1101]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}