{"id":"https://openalex.org/W2046576421","doi":"https://doi.org/10.1093/bioinformatics/btv198","title":"Conformational sampling and structure prediction of multiple interacting loops in soluble and<i>\u03b2</i>-barrel membrane proteins using multi-loop distance-guided chain-growth Monte Carlo method","display_name":"Conformational sampling and structure prediction of multiple interacting loops in soluble and<i>\u03b2</i>-barrel membrane proteins using multi-loop distance-guided chain-growth Monte Carlo method","publication_year":2015,"publication_date":"2015-04-09","ids":{"openalex":"https://openalex.org/W2046576421","doi":"https://doi.org/10.1093/bioinformatics/btv198","mag":"2046576421","pmid":"https://pubmed.ncbi.nlm.nih.gov/25861965"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv198","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv198","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039096170","display_name":"Ke Tang","orcid":"https://orcid.org/0000-0002-1804-5093"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ke Tang","raw_affiliation_strings":["1 Richard and Loan Hill Department of Bioengineering, University of Illinois at Chicago, Chicago, IL,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Richard and Loan Hill Department of Bioengineering, University of Illinois at Chicago, Chicago, IL,","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026713161","display_name":"Samuel W. K. Wong","orcid":"https://orcid.org/0000-0002-7325-7267"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel W.K. Wong","raw_affiliation_strings":["2 Department of Statistics, University of Florida, Gainesville, FL,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2 Department of Statistics, University of Florida, Gainesville, FL,","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012820890","display_name":"Jun S. Liu","orcid":"https://orcid.org/0000-0002-4450-7239"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun S. Liu","raw_affiliation_strings":["3 Department of Statistics, Harvard University, Science Center, Cambridge, MA and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Statistics, Harvard University, Science Center, Cambridge, MA and","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100407234","display_name":"Jinfeng Zhang","orcid":"https://orcid.org/0000-0002-7429-7615"},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jinfeng Zhang","raw_affiliation_strings":["4 Department of Statistics, Florida State University, Tallahassee, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Department of Statistics, Florida State University, Tallahassee, FL, USA","institution_ids":["https://openalex.org/I103163165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091558783","display_name":"Jie Liang","orcid":"https://orcid.org/0000-0002-2773-6427"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jie Liang","raw_affiliation_strings":["1 Richard and Loan Hill Department of Bioengineering, University of Illinois at Chicago, Chicago, IL,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Richard and Loan Hill Department of Bioengineering, University of Illinois at Chicago, Chicago, IL,","institution_ids":["https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5091558783","https://openalex.org/A5100407234"],"corresponding_institution_ids":["https://openalex.org/I103163165","https://openalex.org/I39422238"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1824,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.78252859,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"31","issue":"16","first_page":"2646","last_page":"2652"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8374999761581421,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8374999761581421,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.09130000323057175,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.02250000089406967,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/loop","display_name":"Loop (graph theory)","score":0.7080899477005005},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.6792027950286865},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4639633893966675},{"id":"https://openalex.org/keywords/loop-modeling","display_name":"Loop modeling","score":0.4155319333076477},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4111436605453491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3599514663219452},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.33067697286605835},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32602202892303467},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.3241649866104126},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.32137078046798706},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2886039614677429},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19353556632995605},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18229442834854126},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11495110392570496},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10356858372688293},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09027895331382751}],"concepts":[{"id":"https://openalex.org/C184670325","wikidata":"https://www.wikidata.org/wiki/Q512604","display_name":"Loop (graph theory)","level":2,"score":0.7080899477005005},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.6792027950286865},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4639633893966675},{"id":"https://openalex.org/C45475804","wikidata":"https://www.wikidata.org/wiki/Q6675846","display_name":"Loop modeling","level":4,"score":0.4155319333076477},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4111436605453491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3599514663219452},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.33067697286605835},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32602202892303467},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.3241649866104126},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.32137078046798706},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2886039614677429},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19353556632995605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18229442834854126},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11495110392570496},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10356858372688293},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09027895331382751}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv198","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv198","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25861965","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25861965","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3944665","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4528630","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/16/2646","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/16/2646","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.7799999713897705,"display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G1856843721","display_name":null,"funder_award_id":"1R21GM101552","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3018646388","display_name":null,"funder_award_id":"GM079804","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4206747109","display_name":"Empirical and mathematical approaches to study gradient sensing using yeast as a model","funder_award_id":"1415589","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4863215970","display_name":null,"funder_award_id":"GM079804","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6572005037","display_name":null,"funder_award_id":"DBI 1062328","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7407380294","display_name":"Collaborative Research: ABI Development: Algorithms and Software for Discovery of Non-sequential Protein Structure Similarities","funder_award_id":"1062328","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8009226502","display_name":null,"funder_award_id":"R01 GM079804","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306278","display_name":"Chicago Community Trust","ror":"https://ror.org/01fcdd135"},{"id":"https://openalex.org/F4320317058","display_name":"Chicago Biomedical Consortium","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1526738988","https://openalex.org/W1601752367","https://openalex.org/W1871470604","https://openalex.org/W1972209183","https://openalex.org/W1980374511","https://openalex.org/W1984259239","https://openalex.org/W1991921179","https://openalex.org/W2002447403","https://openalex.org/W2002992883","https://openalex.org/W2005140643","https://openalex.org/W2026807788","https://openalex.org/W2036489791","https://openalex.org/W2036499039","https://openalex.org/W2039735678","https://openalex.org/W2040138931","https://openalex.org/W2046329783","https://openalex.org/W2049357350","https://openalex.org/W2060719766","https://openalex.org/W2060996928","https://openalex.org/W2064480843","https://openalex.org/W2066757437","https://openalex.org/W2067484689","https://openalex.org/W2067645289","https://openalex.org/W2069739265","https://openalex.org/W2078290150","https://openalex.org/W2078621233","https://openalex.org/W2080022084","https://openalex.org/W2086395615","https://openalex.org/W2087928415","https://openalex.org/W2107926260","https://openalex.org/W2109402847","https://openalex.org/W2113712276","https://openalex.org/W2119895681","https://openalex.org/W2125677968","https://openalex.org/W2127489230","https://openalex.org/W2127828823","https://openalex.org/W2128114611","https://openalex.org/W2129153475","https://openalex.org/W2129710532","https://openalex.org/W2131046967","https://openalex.org/W2137604324","https://openalex.org/W2140276308","https://openalex.org/W2160156676","https://openalex.org/W2167577803","https://openalex.org/W2167612644","https://openalex.org/W2171546617","https://openalex.org/W3098733127","https://openalex.org/W4230472026","https://openalex.org/W6679187641"],"related_works":["https://openalex.org/W4364302723","https://openalex.org/W1543174845","https://openalex.org/W639041153","https://openalex.org/W2891175468","https://openalex.org/W2159651730","https://openalex.org/W189899189","https://openalex.org/W2020122119","https://openalex.org/W1920858367","https://openalex.org/W2404483515","https://openalex.org/W2156837607"],"abstract_inverted_index":{"MOTIVATION:":[0],"Loops":[1],"in":[2,7,48,92,168,204],"proteins":[3,131,144],"are":[4,225],"often":[5,38],"involved":[6],"biochemical":[8],"functions.":[9],"Their":[10],"irregularity":[11],"and":[12,18,135,201],"flexibility":[13],"make":[14],"experimental":[15],"structure":[16,34],"determination":[17],"computational":[19],"modeling":[20,25,29],"challenging.":[21],"Most":[22],"current":[23],"loop":[24],"methods":[26],"focus":[27],"on":[28],"single":[30],"loops.":[31,138],"In":[32,67],"protein":[33,112,174],"prediction,":[35],"multiple":[36,59,89,166],"loops":[37,47,61,91,113,167,191],"need":[39],"to":[40,121],"be":[41,52],"modeled":[42],"simultaneously.":[43],"As":[44],"interactions":[45],"among":[46],"spatial":[49],"proximity":[50],"can":[51],"rather":[53],"complex,":[54],"sampling":[55],"the":[56,86,115,140,148,152,176,187],"conformations":[57,87,106,155],"of":[58,85,88,100,107,110,151,183,196],"interacting":[60,90,111,137,190],"is":[62,156,161,212],"a":[63,72,127,181,193],"challenging":[64,142],"task.":[65],"RESULTS:":[66],"this":[68],"study,":[69],"we":[70],"report":[71],"new":[73],"method":[74,95,160],"called":[75],"multi-loop":[76],"Distance-guided":[77],"Sequential":[78],"chain-Growth":[79],"Monte":[80],"Carlo":[81],"(M-DiSGro)":[82],"for":[83,103,164,186],"prediction":[84],"proteins.":[93,171],"Our":[94,159],"achieves":[96],"an":[97],"average":[98,149],"RMSD":[99,150,182],"1.93":[101],"\u00c5":[102,185],"lowest":[104,153,177],"energy":[105,154,178],"36":[108],"pairs":[109],"with":[114,132,145,192],"total":[116,194],"length":[117,195],"ranging":[118],"from":[119],"12":[120,200],"24":[122],"residues.":[123],"We":[124],"further":[125],"constructed":[126],"data":[128,224],"set":[129],"containing":[130],"2,":[133],"3":[134],"4":[136],"For":[139,172],"most":[141],"target":[143],"four":[146],"loops,":[147],"2.35":[157],"\u00c5.":[158],"also":[162],"tested":[163],"predicting":[165],"\u03b2-barrel":[169],"membrane":[170],"outer-membrane":[173],"G,":[175],"conformation":[179],"has":[180],"2.62":[184],"three":[188],"extracellular":[189],"34":[197],"residues":[198,203],"(12,":[199],"10":[202],"each":[205],"loop).":[206],"AVAILABILITY":[207],"AND":[208],"IMPLEMENTATION:":[209],"The":[210],"software":[211],"freely":[213],"available":[214,226],"at:":[215],"tanto.bioe.uic.edu/m-DiSGro.":[216],"CONTACT:":[217],"jinfeng@stat.fsu.edu":[218],"or":[219],"jliang@uic.edu":[220],"SUPPLEMENTARY":[221],"INFORMATION:":[222],"Supplementary":[223],"at":[227],"Bioinformatics":[228],"online.":[229]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2016-06-24T00:00:00"}