{"id":"https://openalex.org/W2171514263","doi":"https://doi.org/10.1093/bioinformatics/btv151","title":"Family genome browser: visualizing genomes with pedigree information","display_name":"Family genome browser: visualizing genomes with pedigree information","publication_year":2015,"publication_date":"2015-03-18","ids":{"openalex":"https://openalex.org/W2171514263","doi":"https://doi.org/10.1093/bioinformatics/btv151","mag":"2171514263","pmid":"https://pubmed.ncbi.nlm.nih.gov/25788626"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv151","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv151","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056364272","display_name":"Liran Juan","orcid":"https://orcid.org/0000-0001-8826-0269"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liran Juan","raw_affiliation_strings":["Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009730904","display_name":"Yongzhuang Liu","orcid":"https://orcid.org/0000-0002-2572-7420"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongzhuang Liu","raw_affiliation_strings":["Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101577163","display_name":"Yongtian Wang","orcid":"https://orcid.org/0000-0003-2766-3106"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongtian Wang","raw_affiliation_strings":["Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049382437","display_name":"Mingxiang Teng","orcid":"https://orcid.org/0000-0002-8536-8941"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingxiang Teng","raw_affiliation_strings":["Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084159324","display_name":"Tianyi Zang","orcid":"https://orcid.org/0000-0003-0195-8731"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianyi Zang","raw_affiliation_strings":["Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100392447"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.714,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.76999401,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"31","issue":"14","first_page":"2262","last_page":"2268"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7400000095367432,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7400000095367432,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2029999941587448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.008500000461935997,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8402738571166992},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5895506739616394},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5820103883743286},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.548010528087616},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.46184036135673523},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46129167079925537},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4388105571269989},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.4171587824821472},{"id":"https://openalex.org/keywords/1000-genomes-project","display_name":"1000 Genomes Project","score":0.41340476274490356},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.39146092534065247},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3690614700317383},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1969076693058014},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.13025879859924316},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.07625555992126465}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8402738571166992},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5895506739616394},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5820103883743286},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.548010528087616},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.46184036135673523},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46129167079925537},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4388105571269989},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.4171587824821472},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.41340476274490356},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.39146092534065247},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3690614700317383},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1969076693058014},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.13025879859924316},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.07625555992126465},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv151","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv151","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25788626","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25788626","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/14/2262","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/14/2262","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W108570951","https://openalex.org/W1965708122","https://openalex.org/W1969647281","https://openalex.org/W1978116054","https://openalex.org/W1981215030","https://openalex.org/W1984037038","https://openalex.org/W2021341670","https://openalex.org/W2058047632","https://openalex.org/W2091494564","https://openalex.org/W2094181083","https://openalex.org/W2096525273","https://openalex.org/W2096791516","https://openalex.org/W2113368041","https://openalex.org/W2113534011","https://openalex.org/W2115038037","https://openalex.org/W2118143563","https://openalex.org/W2119412782","https://openalex.org/W2119928910","https://openalex.org/W2120414630","https://openalex.org/W2122732537","https://openalex.org/W2125263315","https://openalex.org/W2126958968","https://openalex.org/W2127363707","https://openalex.org/W2128016314","https://openalex.org/W2142386149","https://openalex.org/W2145477956","https://openalex.org/W2147248889","https://openalex.org/W2149992227","https://openalex.org/W2157679867","https://openalex.org/W2161633633","https://openalex.org/W2165434114","https://openalex.org/W2168133698","https://openalex.org/W2168142506","https://openalex.org/W2182218214","https://openalex.org/W2558692177","https://openalex.org/W4210767115","https://openalex.org/W4230784961"],"related_works":["https://openalex.org/W2518774397","https://openalex.org/W2069184423","https://openalex.org/W2044720815","https://openalex.org/W1969650636","https://openalex.org/W2187207551","https://openalex.org/W4315640719","https://openalex.org/W2407212450","https://openalex.org/W1573987240","https://openalex.org/W2547692304","https://openalex.org/W2171514263"],"abstract_inverted_index":{"MOTIVATION:":[0],"Families":[1],"with":[2,78,121,200],"inherited":[3],"diseases":[4],"are":[5,58,172],"widely":[6],"used":[7],"in":[8,16,63,109],"Mendelian/complex":[9],"disease":[10],"studies.":[11],"Owing":[12],"to":[13,42,60,69,94,196,208],"the":[14,43,71,89,133,156,177],"advances":[15],"high-throughput":[17],"sequencing":[18,22],"technologies,":[19],"family":[20,29,54,56,72,101,107,157,212],"genome":[21,65,73,119,125,158],"becomes":[23],"more":[24,26],"and":[25,37,47,75,98,113,145,185,193,210,215],"prevalent.":[27],"Visualizing":[28],"genomes":[30,51,57,108,213],"can":[31,105,149,179],"greatly":[32],"facilitate":[33],"human":[34],"genetics":[35],"studies":[36],"personalized":[38],"medicine.":[39],"However,":[40],"due":[41],"complex":[44],"genetic":[45],"relationships":[46],"high":[48],"similarities":[49],"among":[50],"of":[52,129,132,136,141],"consanguineous":[53],"members,":[55],"difficult":[59],"be":[61,150],"visualized":[62],"traditional":[64],"visualization":[66,99],"framework.":[67],"How":[68],"visualize":[70,106],"variants":[74,188],"their":[76],"functions":[77],"integrated":[79],"pedigree":[80,122],"information":[81],"remains":[82],"a":[83,190],"critical":[84],"challenge.":[85],"RESULTS:":[86],"We":[87],"developed":[88],"Family":[90,124],"Genome":[91],"Browser":[92],"(FGB)":[93],"provide":[95],"comprehensive":[96],"analysis":[97],"for":[100,155,189],"genomes.":[102],"The":[103,220],"FGB":[104,178,221],"both":[110],"individual":[111],"level":[112,115],"variant":[114,167],"effectively,":[116],"through":[117],"integrating":[118],"data":[120],"information.":[123],"analysis,":[126],"including":[127],"determination":[128],"parental":[130],"origin":[131],"variants,":[134,159],"detection":[135],"de":[137,182],"novo":[138,183],"mutations,":[139],"identification":[140],"potential":[142,169],"recombination":[143],"events":[144],"identical-by-decent":[146],"segments,":[147],"etc.,":[148,171],"performed":[151],"flexibly.":[152],"Diverse":[153],"annotations":[154],"such":[160],"as":[161,174],"dbSNP":[162],"memberships,":[163],"linkage":[164],"disequilibriums,":[165],"genes,":[166],"effects,":[168],"phenotypes,":[170],"illustrated":[173],"well.":[175],"Moreover,":[176],"automatically":[180],"search":[181],"mutations":[184],"compound":[186],"heterozygous":[187],"selected":[191],"individual,":[192],"guide":[194],"investigators":[195],"find":[197],"high-risk":[198],"genes":[199],"flexible":[201],"navigation":[202],"options.":[203],"These":[204],"features":[205],"enable":[206],"users":[207],"investigate":[209],"understand":[211],"intuitively":[214],"systematically.":[216],"AVAILABILITY":[217],"AND":[218],"IMPLEMENTATION:":[219],"is":[222],"available":[223],"at":[224],"http://mlg.hit.edu.cn/FGB/.":[225]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
