{"id":"https://openalex.org/W2168167872","doi":"https://doi.org/10.1093/bioinformatics/btv114","title":"WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools","display_name":"WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools","publication_year":2015,"publication_date":"2015-03-15","ids":{"openalex":"https://openalex.org/W2168167872","doi":"https://doi.org/10.1093/bioinformatics/btv114","mag":"2168167872","pmid":"https://pubmed.ncbi.nlm.nih.gov/25777524"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv114","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/14/2371/17086629/btv114.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/14/2371/17086629/btv114.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071991185","display_name":"Owen J. L. Rackham","orcid":"https://orcid.org/0000-0002-4390-0872"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB","SG"],"is_corresponding":true,"raw_author_name":"Owen J. L. Rackham","raw_affiliation_strings":["1 Program in Cardiovascular & Metabolic Disorders and Centre for Computational Biology, Duke-NUS Graduate Medical School, Singapore,","2 MRC Clinical Sciences Centre, Imperial College London, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Cardiovascular & Metabolic Disorders and Centre for Computational Biology, Duke-NUS Graduate Medical School, Singapore,","institution_ids":["https://openalex.org/I4210126319"]},{"raw_affiliation_string":"2 MRC Clinical Sciences Centre, Imperial College London, UK,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017494868","display_name":"\u03a0\u03ad\u03c4\u03c1\u03bf\u03c2 \u0394\u03b5\u03bb\u03bb\u03b1\u03c0\u03cc\u03c1\u03c4\u03b1\u03c2","orcid":"https://orcid.org/0000-0002-0117-8447"},"institutions":[{"id":"https://openalex.org/I73142707","display_name":"Athens University of Economics and Business","ror":"https://ror.org/03s262162","country_code":"GR","type":"education","lineage":["https://openalex.org/I73142707"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Petros Dellaportas","raw_affiliation_strings":["3 Department of Statistics, Athens University of Economics and Business, Greece and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3 Department of Statistics, Athens University of Economics and Business, Greece and","institution_ids":["https://openalex.org/I73142707"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070290329","display_name":"Enrico Petretto","orcid":"https://orcid.org/0000-0003-2163-5921"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["GB","SG"],"is_corresponding":false,"raw_author_name":"Enrico Petretto","raw_affiliation_strings":["1 Program in Cardiovascular & Metabolic Disorders and Centre for Computational Biology, Duke-NUS Graduate Medical School, Singapore,","2 MRC Clinical Sciences Centre, Imperial College London, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Program in Cardiovascular & Metabolic Disorders and Centre for Computational Biology, Duke-NUS Graduate Medical School, Singapore,","institution_ids":["https://openalex.org/I4210126319"]},{"raw_affiliation_string":"2 MRC Clinical Sciences Centre, Imperial College London, UK,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016094222","display_name":"Leonardo Bottolo","orcid":"https://orcid.org/0000-0002-6381-2327"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Leonardo Bottolo","raw_affiliation_strings":["4 Department of Mathematics, Imperial College London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"4 Department of Mathematics, Imperial College London, UK","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5016094222","https://openalex.org/A5071991185"],"corresponding_institution_ids":["https://openalex.org/I4210126319","https://openalex.org/I47508984"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.2587,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.88344754,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"31","issue":"14","first_page":"2371","last_page":"2373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.8967000246047974,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.8967000246047974,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.009999999776482582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.009200000204145908,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7242960929870605},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7193626165390015},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6200441122055054},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.558529257774353},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5306443572044373},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.45744723081588745},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4361456632614136},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3410317301750183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16835522651672363},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1362571120262146},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10745397210121155}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7242960929870605},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7193626165390015},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6200441122055054},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.558529257774353},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5306443572044373},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.45744723081588745},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4361456632614136},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3410317301750183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16835522651672363},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1362571120262146},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10745397210121155},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btv114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv114","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/14/2371/17086629/btv114.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25777524","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25777524","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.soton.ac.uk:446734","is_oa":false,"landing_page_url":"https://eprints.soton.ac.uk/446734/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1554396","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1554396/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BIOINFORMATICS , 31  (14)   pp. 2371-2373.   (2015)      ","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:3461076","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4495289","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/14/2371","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/14/2371","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/57230","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/57230","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2373","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv114","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/14/2371/17086629/btv114.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168167872.pdf","grobid_xml":"https://content.openalex.org/works/W2168167872.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W13930856","https://openalex.org/W2003377052","https://openalex.org/W2123032740","https://openalex.org/W2134266353","https://openalex.org/W2150194502","https://openalex.org/W2150936392","https://openalex.org/W2797570932"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2011676020","https://openalex.org/W2770764537"],"abstract_inverted_index":{"MOTIVATION:":[0],"As":[1,60],"the":[2,34,91,127,142,155],"number":[3],"of":[4,36,81,93,157,165],"studies":[5],"looking":[6],"at":[7,185,198],"differences":[8],"between":[9],"DNA":[10,70,111],"methylation":[11,71,112,171],"increases,":[12],"there":[13,63],"is":[14,53,64,138],"a":[15,57,61,69,78,102,149,163],"growing":[16],"demand":[17],"to":[18,24,48,89,131,140],"develop":[19],"and":[20,42,84,178],"benchmark":[21,164],"statistical":[22,95,145],"methods":[23,38,168],"analyse":[25],"these":[26,37],"data.":[27],"To":[28,153],"date":[29],"no":[30],"objective":[31],"approach":[32],"for":[33,56,68,148,169],"comparison":[35],"has":[39],"been":[40],"developed":[41,100],"as":[43],"such":[44],"it":[45,137],"remains":[46],"difficult":[47],"assess":[49],"which":[50],"analysis":[51,146],"tool":[52,106,147],"most":[54,143],"appropriate":[55,144],"given":[58,150],"experiment.":[59],"result,":[62],"an":[65],"unmet":[66],"need":[67],"data":[72,113,195],"simulator":[73,116],"that":[74,107],"can":[75,85,118],"accurately":[76],"reproduce":[77],"wide":[79],"range":[80],"experimental":[82],"setups,":[83],"be":[86,119],"routinely":[87],"used":[88,167],"compare":[90],"performance":[92],"different":[94],"models.":[96],"RESULTS:":[97],"We":[98],"have":[99],"WGBSSuite,":[101],"flexible":[103],"stochastic":[104],"simulation":[105],"generates":[108],"single-base":[109],"resolution":[110],"genome-wide.":[114],"Several":[115],"parameters":[117],"derived":[120],"directly":[121],"from":[122],"real":[123,133],"datasets":[124],"provided":[125],"by":[126],"user":[128],"in":[129],"order":[130],"mimic":[132],"case":[134],"scenarios.":[135],"Thus,":[136],"possible":[139],"choose":[141],"simulated":[151],"design.":[152],"show":[154],"usefulness":[156],"our":[158],"simulator,":[159],"we":[160],"also":[161],"report":[162],"commonly":[166],"differential":[170],"analysis.":[172],"AVAILABILITY":[173],"AND":[174],"IMPLEMENTATION:":[175],"WGBS":[176],"code":[177],"documentation":[179],"are":[180,196],"available":[181,197],"under":[182],"GNU":[183],"licence":[184],"http://www.wgbssuite.org.uk/":[186],"CONTACT:":[187],":":[188],"owen.rackham@imperial.ac.uk":[189],"or":[190],"l.bottolo@imperial.ac.uk":[191],"SUPPLEMENTARY":[192],"INFORMATION:":[193],"Supplementary":[194],"Bioinformatics":[199],"online.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
