{"id":"https://openalex.org/W2109638276","doi":"https://doi.org/10.1093/bioinformatics/btv086","title":"RAPTR-SV: a hybrid method for the detection of structural variants","display_name":"RAPTR-SV: a hybrid method for the detection of structural variants","publication_year":2015,"publication_date":"2015-02-16","ids":{"openalex":"https://openalex.org/W2109638276","doi":"https://doi.org/10.1093/bioinformatics/btv086","mag":"2109638276","pmid":"https://pubmed.ncbi.nlm.nih.gov/25686638"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv086","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/13/2084/49034545/bioinformatics_31_13_2084.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/13/2084/49034545/bioinformatics_31_13_2084.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002044231","display_name":"Derek M. Bickhart","orcid":"https://orcid.org/0000-0003-2223-9285"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Derek M. Bickhart","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034273455","display_name":"J.L. Hutchison","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jana L. Hutchison","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044571364","display_name":"Lingyang Xu","orcid":"https://orcid.org/0000-0002-8463-6668"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lingyang Xu","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062969932","display_name":"Robert D. Schnabel","orcid":"https://orcid.org/0000-0001-5018-7641"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert D. Schnabel","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059741770","display_name":"Jeremy F. Taylor","orcid":"https://orcid.org/0000-0002-6997-7245"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy F. Taylor","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037000551","display_name":"James M. Reecy","orcid":"https://orcid.org/0000-0003-4602-0990"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James M. Reecy","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058793675","display_name":"Steven Schroeder","orcid":"https://orcid.org/0000-0001-9103-5150"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Schroeder","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028661370","display_name":"Curtis P. Van Tassell","orcid":"https://orcid.org/0000-0002-8416-2087"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Curt P. Van Tassell","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032158473","display_name":"Tad S. Sonstegard","orcid":"https://orcid.org/0000-0002-6446-9276"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tad S. Sonstegard","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065672294","display_name":"George E. Liu","orcid":"https://orcid.org/0000-0003-0192-6705"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George E. Liu","raw_affiliation_strings":["1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, 2Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, 3Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and 4Department of Animal Science, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I76835614","https://openalex.org/I66946132","https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5002044231"],"corresponding_institution_ids":["https://openalex.org/I173911158","https://openalex.org/I66946132","https://openalex.org/I76835614"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.1718,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.92048684,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"31","issue":"13","first_page":"2084","last_page":"2090"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.650600016117096,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.650600016117096,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.32109999656677246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7806246280670166},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6916730999946594},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6094569563865662},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5197262763977051},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.4492439925670624},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44040441513061523},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3692326843738556},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3649842143058777},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17036747932434082},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14339092373847961}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7806246280670166},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6916730999946594},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6094569563865662},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5197262763977051},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.4492439925670624},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44040441513061523},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3692326843738556},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3649842143058777},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17036747932434082},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14339092373847961},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017384","descriptor_name":"Sequence Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btv086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv086","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/13/2084/49034545/bioinformatics_31_13_2084.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25686638","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25686638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:lib.dr.iastate.edu:ans_pubs-1158","is_oa":false,"landing_page_url":"https://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=1158&context=ans_pubs","pdf_url":null,"source":{"id":"https://openalex.org/S4377196104","display_name":"Iowa State University Digital Repository (Iowa State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173911158","host_organization_name":"Iowa State University","host_organization_lineage":["https://openalex.org/I173911158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Animal Science Publications","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/13/2084","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/13/2084","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv086","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/13/2084/49034545/bioinformatics_31_13_2084.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5299999713897705,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2633145439","display_name":null,"funder_award_id":"2013-68004","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G2671297895","display_name":null,"funder_award_id":"2013-68004-20364","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G3153070493","display_name":null,"funder_award_id":"2011-67015","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G358926144","display_name":null,"funder_award_id":"2011-68004-30214","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G5081378253","display_name":null,"funder_award_id":"2011-68004-30367","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G5158503910","display_name":null,"funder_award_id":"2011-67015-30183","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G667678829","display_name":null,"funder_award_id":"2011-68004-30367","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G75219063","display_name":null,"funder_award_id":"2013-68004-20364","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G7996617418","display_name":null,"funder_award_id":"2011-68004-30214","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109638276.pdf","grobid_xml":"https://content.openalex.org/works/W2109638276.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W2000586119","https://openalex.org/W2001076144","https://openalex.org/W2049997041","https://openalex.org/W2102619694","https://openalex.org/W2104146295","https://openalex.org/W2107688500","https://openalex.org/W2111350087","https://openalex.org/W2116126626","https://openalex.org/W2126653569","https://openalex.org/W2135048780","https://openalex.org/W2139747296","https://openalex.org/W2146005104","https://openalex.org/W2148794854","https://openalex.org/W2154397429","https://openalex.org/W2158619351","https://openalex.org/W2168133698","https://openalex.org/W2169508919","https://openalex.org/W2506642202","https://openalex.org/W2611804663"],"related_works":["https://openalex.org/W2749690376","https://openalex.org/W4281673905","https://openalex.org/W2788563018","https://openalex.org/W2786317006","https://openalex.org/W2997587123","https://openalex.org/W3206385231","https://openalex.org/W4285339164","https://openalex.org/W1566482460","https://openalex.org/W3118256810","https://openalex.org/W2105740794"],"abstract_inverted_index":{"MOTIVATION:":[0],"Identification":[1],"of":[2,14,48,55,115,125],"structural":[3],"variants":[4],"(SVs)":[5],"in":[6,10,101,107,111],"sequence":[7],"data":[8],"results":[9,133],"a":[11,53],"large":[12],"number":[13],"false":[15],"positive":[16],"calls":[17,60],"using":[18,27],"existing":[19],"software,":[20,127],"which":[21],"overburdens":[22],"subsequent":[23],"validation.":[24],"RESULTS:":[25],"Simulations":[26],"RAPTR-SV":[28,38,74,98],"and":[29,42,64,103,131],"other,":[30],"similar":[31],"algorithms":[32],"for":[33,78,129],"SV":[34],"detection":[35],"revealed":[36],"that":[37],"had":[39],"superior":[40,76],"sensitivity":[41,77],"precision,":[43],"as":[44,81],"it":[45,82],"recovered":[46],"66.4%":[47],"simulated":[49],"tandem":[50,79],"duplications":[51,86],"with":[52,59],"precision":[54],"99.2%.":[56],"When":[57],"compared":[58],"made":[61],"by":[62],"Delly":[63],"LUMPY":[65],"on":[66,137],"available":[67,136],"datasets":[68],"from":[69],"the":[70,108,112,116,126,138],"1000":[71],"genomes":[72],"project,":[73],"showed":[75],"duplications,":[80],"identified":[83],"2-fold":[84],"more":[85],"than":[87],"Delly,":[88],"while":[89],"making":[90],"\u223c85%":[91],"fewer":[92],"duplication":[93],"predictions.":[94],"AVAILABILITY":[95],"AND":[96],"IMPLEMENTATION:":[97],"is":[99],"written":[100],"Java":[102,117],"uses":[104],"new":[105],"features":[106],"collections":[109],"framework":[110],"latest":[113],"release":[114],"version":[118,124],"8":[119],"language":[120],"specifications.":[121],"A":[122],"compiled":[123],"instructions":[128],"usage":[130],"test":[132],"files":[134],"are":[135],"GitHub":[139],"repository":[140],"page:":[141],"https://github.com/njdbickhart/RAPTR-SV.":[142],"CONTACT:":[143],"derek.bickhart@ars.usda.gov.":[144]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}