{"id":"https://openalex.org/W2126810594","doi":"https://doi.org/10.1093/bioinformatics/btv043","title":"CypRules: a rule-based P450 inhibition prediction server","display_name":"CypRules: a rule-based P450 inhibition prediction server","publication_year":2015,"publication_date":"2015-01-22","ids":{"openalex":"https://openalex.org/W2126810594","doi":"https://doi.org/10.1093/bioinformatics/btv043","mag":"2126810594","pmid":"https://pubmed.ncbi.nlm.nih.gov/25617412"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btv043","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv043","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1869/50314327/bioinformatics_31_11_1869.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1869/50314327/bioinformatics_31_11_1869.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009668054","display_name":"Chi-Yu Shao","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chi-Yu Shao","raw_affiliation_strings":["1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002510581","display_name":"Bo\u2010Han Su","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Bo-Han Su","raw_affiliation_strings":["1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102820899","display_name":"Yi-Shu Tu","orcid":"https://orcid.org/0000-0003-0210-3778"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Shu Tu","raw_affiliation_strings":["1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102074668","display_name":"Chieh Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chieh Lin","raw_affiliation_strings":["1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083648905","display_name":"Olivia A. Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Olivia A. Lin","raw_affiliation_strings":["1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021255582","display_name":"Yufeng Jane Tseng","orcid":"https://orcid.org/0000-0002-8461-6181"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Yufeng J. Tseng","raw_affiliation_strings":["1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Graduate Institute of Biomedical Electronics and Bioinformatics and 2 Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei, Taiwan 106","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5021255582"],"corresponding_institution_ids":["https://openalex.org/I16733864"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.8473,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.94105351,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"31","issue":"11","first_page":"1869","last_page":"1871"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.722000002861023,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.722000002861023,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.10090000182390213,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.019200000911951065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7001230716705322},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4200468063354492},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.370068222284317}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7001230716705322},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4200468063354492},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.370068222284317}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003577","descriptor_name":"Cytochrome P-450 Enzyme System","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003577","descriptor_name":"Cytochrome P-450 Enzyme System","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003577","descriptor_name":"Cytochrome P-450 Enzyme System","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065607","descriptor_name":"Cytochrome P-450 Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D065607","descriptor_name":"Cytochrome P-450 Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D065607","descriptor_name":"Cytochrome P-450 Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btv043","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv043","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1869/50314327/bioinformatics_31_11_1869.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25617412","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25617412","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:31/11/1869","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/31/11/1869","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btv043","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btv043","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/11/1869/50314327/bioinformatics_31_11_1869.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6301042052","display_name":null,"funder_award_id":"103-2325-B-400-005","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G7850421876","display_name":null,"funder_award_id":"103-2325-B-002-048","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G958991087","display_name":null,"funder_award_id":"103-2321-B-002-094","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320323900","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126810594.pdf","grobid_xml":"https://content.openalex.org/works/W2126810594.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W84368778","https://openalex.org/W1551909886","https://openalex.org/W1974254541","https://openalex.org/W1990399577","https://openalex.org/W2031216614","https://openalex.org/W2045776044","https://openalex.org/W2091450245","https://openalex.org/W2107450474","https://openalex.org/W2123676318","https://openalex.org/W2125055259","https://openalex.org/W2134356816","https://openalex.org/W2159887157","https://openalex.org/W2913656430","https://openalex.org/W6633119224","https://openalex.org/W6676150899"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"UNLABELLED:":[0],"Cytochrome":[1],"P450":[2],"(CYPs)":[3],"are":[4,150],"the":[5,21,26,50,90,109],"major":[6],"enzymes":[7,24,34,59],"involved":[8],"in":[9,29,55],"drug":[10,53],"metabolism":[11,54],"and":[12,44,52,97,141,144],"bioactivation.":[13],"Inhibition":[14],"models":[15,87],"were":[16],"constructed":[17],"for":[18,36,47,101,104,120,147],"five":[19,33],"of":[20,49,112,125,129],"most":[22],"popular":[23],"from":[25],"CYP":[27,58,76,102],"superfamily":[28],"human":[30,56],"liver.":[31],"The":[32],"chosen":[35],"this":[37,72],"study,":[38],"namely":[39],"CYP1A2,":[40],"CYP2D6,":[41],"CYP2C19,":[42],"CYP2C9":[43],"CYP3A4,":[45],"account":[46],"90%":[48],"xenobiotic":[51],"body.":[57],"can":[60,95,117],"be":[61,118],"inhibited":[62],"or":[63,68],"induced":[64],"by":[65,89],"various":[66],"drugs":[67],"chemical":[69],"compounds.":[70,131],"In":[71],"work,":[73],"a":[74,126],"rule-based":[75,91],"inhibition":[77,103],"prediction":[78],"online":[79],"server,":[80],"CypRules,":[81],"was":[82],"created":[83],"based":[84],"on":[85],"predictive":[86],"generated":[88],"C5.0":[92],"algorithm.":[93],"CypRules":[94,135],"predict":[96],"provide":[98],"structural":[99],"rulesets":[100],"each":[105],"compound":[106],"uploaded":[107],"to":[108],"server.":[110],"Capable":[111],"fast":[113],"execution":[114],"performance,":[115],"it":[116],"used":[119],"virtual":[121],"high-throughput":[122],"screening":[123],"(VHTS)":[124],"large":[127],"set":[128],"testing":[130],"AVAILABILITY":[132],"AND":[133],"IMPLEMENTATION:":[134],"is":[136],"freely":[137],"accessible":[138],"at":[139,153],"http://cyprules.cmdm.tw/":[140],"models,":[142],"descriptor":[143],"program":[145],"files":[146],"all":[148],"compounds":[149],"publically":[151],"available":[152],"http://cyprules.cmdm.tw/sources/sources.rar.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
