{"id":"https://openalex.org/W2100266218","doi":"https://doi.org/10.1093/bioinformatics/btu849","title":"An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps","display_name":"An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps","publication_year":2014,"publication_date":"2014-12-26","ids":{"openalex":"https://openalex.org/W2100266218","doi":"https://doi.org/10.1093/bioinformatics/btu849","mag":"2100266218","pmid":"https://pubmed.ncbi.nlm.nih.gov/25543048"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu849","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu849","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1490/50306203/bioinformatics_31_9_1490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1490/50306203/bioinformatics_31_9_1490.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034682723","display_name":"Guillaume Bouvier","orcid":"https://orcid.org/0000-0003-2792-6084"},"institutions":[{"id":"https://openalex.org/I4210155240","display_name":"Canadian Nautical Research Society","ror":"https://ror.org/04zzdbj59","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210155240"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["CA","FR"],"is_corresponding":true,"raw_author_name":"Guillaume Bouvier","raw_affiliation_strings":["Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","CNRS UMR 3528"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"CNRS UMR 3528","institution_ids":["https://openalex.org/I4210155240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077272495","display_name":"Nathan Desdouits","orcid":"https://orcid.org/0000-0003-1467-3559"},"institutions":[{"id":"https://openalex.org/I4210155240","display_name":"Canadian Nautical Research Society","ror":"https://ror.org/04zzdbj59","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210155240"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["CA","FR"],"is_corresponding":false,"raw_author_name":"Nathan Desdouits","raw_affiliation_strings":["Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","CNRS UMR 3528"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"CNRS UMR 3528","institution_ids":["https://openalex.org/I4210155240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063445755","display_name":"Mathias Ferber","orcid":null},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I4210155240","display_name":"Canadian Nautical Research Society","ror":"https://ror.org/04zzdbj59","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210155240"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["CA","FR"],"is_corresponding":false,"raw_author_name":"Mathias Ferber","raw_affiliation_strings":["Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","CNRS UMR 3528"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"CNRS UMR 3528","institution_ids":["https://openalex.org/I4210155240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064860825","display_name":"Arnaud Blondel","orcid":"https://orcid.org/0000-0001-9586-3025"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210155240","display_name":"Canadian Nautical Research Society","ror":"https://ror.org/04zzdbj59","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210155240"]}],"countries":["CA","FR"],"is_corresponding":false,"raw_author_name":"Arnaud Blondel","raw_affiliation_strings":["Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","CNRS UMR 3528"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"CNRS UMR 3528","institution_ids":["https://openalex.org/I4210155240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024276029","display_name":"Micha\u00ebl Nilges","orcid":"https://orcid.org/0000-0002-1451-8092"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I4210155240","display_name":"Canadian Nautical Research Society","ror":"https://ror.org/04zzdbj59","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210155240"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["CA","FR"],"is_corresponding":false,"raw_author_name":"Michael Nilges","raw_affiliation_strings":["Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","CNRS UMR 3528"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur, Unit\u00e9 de Bioinformatique Structurale; CNRS UMR 3528; D\u00e9partement de Biologie Structurale et Chimie; F-75015, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"CNRS UMR 3528","institution_ids":["https://openalex.org/I4210155240"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034682723"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I4210155240"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8528,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.73206705,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"31","issue":"9","first_page":"1490","last_page":"1492"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6752419471740723},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.6744853258132935},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40312460064888},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34868866205215454},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08684635162353516}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6752419471740723},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.6744853258132935},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40312460064888},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34868866205215454},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08684635162353516}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu849","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu849","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1490/50306203/bioinformatics_31_9_1490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25543048","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25543048","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:pasteur-01145388v1","is_oa":false,"landing_page_url":"https://pasteur.hal.science/pasteur-01145388","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2015, 31 (9), pp.1490-1492. &#x27E8;10.1093/bioinformatics/btu849&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu849","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu849","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1490/50306203/bioinformatics_31_9_1490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100266218.pdf","grobid_xml":"https://content.openalex.org/works/W2100266218.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2005193187","https://openalex.org/W2028575265","https://openalex.org/W2030636483","https://openalex.org/W2072732271","https://openalex.org/W2132592018","https://openalex.org/W2140555044","https://openalex.org/W4251431888"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
