{"id":"https://openalex.org/W1500160249","doi":"https://doi.org/10.1093/bioinformatics/btu842","title":"J-Circos: an interactive Circos plotter","display_name":"J-Circos: an interactive Circos plotter","publication_year":2014,"publication_date":"2014-12-24","ids":{"openalex":"https://openalex.org/W1500160249","doi":"https://doi.org/10.1093/bioinformatics/btu842","mag":"1500160249","pmid":"https://pubmed.ncbi.nlm.nih.gov/25540184"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu842","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu842","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1463/17085787/btu842.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1463/17085787/btu842.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006368293","display_name":"Jiyuan An","orcid":"https://orcid.org/0000-0002-8183-8248"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I2801814493","display_name":"Princess Alexandra Hospital","ror":"https://ror.org/04mqb0968","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1302211766","https://openalex.org/I1302211766","https://openalex.org/I2801244131","https://openalex.org/I2801244131","https://openalex.org/I2801814493","https://openalex.org/I4210089726"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jiyuan An","raw_affiliation_strings":["1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","institution_ids":["https://openalex.org/I2801814493","https://openalex.org/I1308309334","https://openalex.org/I149704539","https://openalex.org/I160993911"]},{"raw_affiliation_string":"Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051491693","display_name":"John Lai","orcid":"https://orcid.org/0000-0002-8019-7012"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I2801814493","display_name":"Princess Alexandra Hospital","ror":"https://ror.org/04mqb0968","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1302211766","https://openalex.org/I1302211766","https://openalex.org/I2801244131","https://openalex.org/I2801244131","https://openalex.org/I2801814493","https://openalex.org/I4210089726"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"John Lai","raw_affiliation_strings":["1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","institution_ids":["https://openalex.org/I2801814493","https://openalex.org/I1308309334","https://openalex.org/I149704539","https://openalex.org/I160993911"]},{"raw_affiliation_string":"Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005494115","display_name":"Atul Sajjanhar","orcid":"https://orcid.org/0000-0002-0445-0573"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I2801814493","display_name":"Princess Alexandra Hospital","ror":"https://ror.org/04mqb0968","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1302211766","https://openalex.org/I1302211766","https://openalex.org/I2801244131","https://openalex.org/I2801244131","https://openalex.org/I2801814493","https://openalex.org/I4210089726"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Atul Sajjanhar","raw_affiliation_strings":["1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","institution_ids":["https://openalex.org/I2801814493","https://openalex.org/I1308309334","https://openalex.org/I149704539","https://openalex.org/I160993911"]},{"raw_affiliation_string":"Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044100781","display_name":"Jyotsna Batra","orcid":"https://orcid.org/0000-0003-4646-6247"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I2801814493","display_name":"Princess Alexandra Hospital","ror":"https://ror.org/04mqb0968","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1302211766","https://openalex.org/I1302211766","https://openalex.org/I2801244131","https://openalex.org/I2801244131","https://openalex.org/I2801814493","https://openalex.org/I4210089726"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jyotsna Batra","raw_affiliation_strings":["1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","institution_ids":["https://openalex.org/I2801814493","https://openalex.org/I1308309334","https://openalex.org/I149704539","https://openalex.org/I160993911"]},{"raw_affiliation_string":"Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100704321","display_name":"Chenwei Wang","orcid":"https://orcid.org/0000-0002-0920-8639"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I2801814493","display_name":"Princess Alexandra Hospital","ror":"https://ror.org/04mqb0968","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1302211766","https://openalex.org/I1302211766","https://openalex.org/I2801244131","https://openalex.org/I2801244131","https://openalex.org/I2801814493","https://openalex.org/I4210089726"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Chenwei Wang","raw_affiliation_strings":["1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","institution_ids":["https://openalex.org/I2801814493","https://openalex.org/I1308309334","https://openalex.org/I149704539","https://openalex.org/I160993911"]},{"raw_affiliation_string":"Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089480920","display_name":"Colleen C. Nelson","orcid":"https://orcid.org/0000-0001-6410-4843"},"institutions":[{"id":"https://openalex.org/I1308309334","display_name":"Translational Research Institute","ror":"https://ror.org/00v807439","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1308309334"]},{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]},{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I2801814493","display_name":"Princess Alexandra Hospital","ror":"https://ror.org/04mqb0968","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1302211766","https://openalex.org/I1302211766","https://openalex.org/I2801244131","https://openalex.org/I2801244131","https://openalex.org/I2801814493","https://openalex.org/I4210089726"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Colleen C Nelson","raw_affiliation_strings":["1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","Queensland University of Technology, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Australian Prostate Cancer Research Centre-Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology, Princess Alexandra Hospital and Translational Research Institute, Brisbane, QLD 4102, Australia and 2School of Information Technology, Deakin University, Burwood, VIC 3125, Australia","institution_ids":["https://openalex.org/I2801814493","https://openalex.org/I1308309334","https://openalex.org/I149704539","https://openalex.org/I160993911"]},{"raw_affiliation_string":"Queensland University of Technology, Brisbane, Australia","institution_ids":["https://openalex.org/I160993911"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006368293"],"corresponding_institution_ids":["https://openalex.org/I1308309334","https://openalex.org/I149704539","https://openalex.org/I160993911","https://openalex.org/I2801814493"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03065564,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"31","issue":"9","first_page":"1463","last_page":"1465"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.28369998931884766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.28369998931884766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.11840000003576279,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.10339999943971634,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plotter","display_name":"Plotter","score":0.7792105674743652},{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.7683384418487549},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7679722309112549},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.6872748732566833},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6285049319267273},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5674673318862915},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5278204083442688},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.4959295690059662},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.49181678891181946},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4384315609931946},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.34368908405303955},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3047710955142975},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29712527990341187}],"concepts":[{"id":"https://openalex.org/C124772163","wikidata":"https://www.wikidata.org/wiki/Q193255","display_name":"Plotter","level":2,"score":0.7792105674743652},{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.7683384418487549},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7679722309112549},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.6872748732566833},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6285049319267273},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5674673318862915},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5278204083442688},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.4959295690059662},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.49181678891181946},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4384315609931946},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.34368908405303955},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3047710955142975},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29712527990341187},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C78762247","wikidata":"https://www.wikidata.org/wiki/Q1273174","display_name":"Petroleum engineering","level":1,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btu842","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu842","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1463/17085787/btu842.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25540184","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25540184","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.qut.edu.au:79920","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/79920/1/bioinformatics.btu842.full.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Contribution to Journal"},{"id":"pmh:oai:figshare.com:article/20916904","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/J-Circos_an_interactive_Circos_plotter/20916904","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"mag:1500160249","is_oa":false,"landing_page_url":"https://eprints.qut.edu.au/79920/","pdf_url":null,"source":{"id":"https://openalex.org/S4306510308","display_name":"Faculty of Health; Institute of Health and Biomedical Innovation","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Faculty of Health; Institute of Health and Biomedical Innovation","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu842","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu842","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1463/17085787/btu842.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W1500160249.pdf"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2048002474","https://openalex.org/W2064469303","https://openalex.org/W2072420737","https://openalex.org/W2107940314","https://openalex.org/W2110014529","https://openalex.org/W2140916263","https://openalex.org/W2158804744","https://openalex.org/W2916083703"],"related_works":[],"abstract_inverted_index":{"SUMMARY:":[0],"Circos":[1,17,55,63,81,94],"plots":[2],"are":[3,176,192,203],"graphical":[4],"outputs":[5],"that":[6,85,91,175],"display":[7,118],"three":[8],"dimensional":[9],"chromosomal":[10,170],"interactions":[11,171],"and":[12,108,119,172,189],"fusion":[13,173],"transcripts.":[14],"However,":[15],"the":[16,106,125,156],"plot":[18,82,93],"tool":[19,56,83,90],"is":[20,86],"not":[21,35],"an":[22,53,87],"interactive":[23,88],"visualization":[24,89],"tool,":[25],"but":[26,66],"rather":[27],"a":[28,80],"figure":[29],"generator.":[30],"For":[31],"example,":[32],"it":[33,44,131],"does":[34,43],"enable":[36,163],"data":[37,49,104,113,145,150,202],"to":[38,61,64,73,101,105,129,132,165,179],"be":[39,71,133],"added":[40],"dynamically":[41,102],"nor":[42],"provide":[45],"information":[46,110],"for":[47,111],"specific":[48,112],"points":[50,114],"interactively.":[51],"Recently,":[52],"R-based":[54],"(RCircos)":[57],"has":[58],"been":[59],"developed":[60,79],"integrate":[62],"R,":[65],"similarly,":[67],"Rcircos":[68],"can":[69,92,143],"only":[70],"used":[72,134],"generate":[74],"plots.":[75],"Thus,":[76],"we":[77],"have":[78],"(J-Circos)":[84],"figures,":[95],"as":[96,98,152,154],"well":[97,153],"being":[99],"able":[100],"add":[103],"figure,":[107],"providing":[109],"using":[115,148],"mouse":[116],"hover":[117],"zoom":[120],"in/out":[121],"functions.":[122],"J-Circos":[123,147,161],"uses":[124],"Java":[126],"computer":[127],"language":[128],"enable,":[130],"on":[135],"most":[136],"operating":[137],"systems":[138],"(Windows,":[139],"MacOS,":[140],"Linux).":[141],"Users":[142],"input":[144],"into":[146],"flat":[149],"formats,":[151],"from":[155,181],"Graphical":[157],"user":[158],"interface":[159],"(GUI).":[160],"will":[162],"biologists":[164],"better":[166],"study":[167],"more":[168],"complex":[169],"transcripts":[174],"otherwise":[177],"difficult":[178],"visualize":[180],"next-generation":[182],"sequencing":[183],"data.":[184],"AVAILABILITY":[185],"AND":[186],"IMPLEMENTATION:":[187],"J-circos":[188],"its":[190],"manual":[191],"freely":[193],"available":[194,204],"at":[195,205],"http://www.australianprostatecentre.org/research/software/jcircos":[196],"CONTACT:":[197],"j.an@qut.edu.au":[198],"SUPPLEMENTARY":[199],"INFORMATION:":[200],"Supplementary":[201],"Bioinformatics":[206],"online.":[207]},"counts_by_year":[],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
