{"id":"https://openalex.org/W2104389208","doi":"https://doi.org/10.1093/bioinformatics/btu834","title":"Empowering biologists with multi-omics data: colorectal cancer as a paradigm","display_name":"Empowering biologists with multi-omics data: colorectal cancer as a paradigm","publication_year":2014,"publication_date":"2014-12-18","ids":{"openalex":"https://openalex.org/W2104389208","doi":"https://doi.org/10.1093/bioinformatics/btu834","mag":"2104389208","pmid":"https://pubmed.ncbi.nlm.nih.gov/25527095"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu834","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu834","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1436/50306211/bioinformatics_31_9_1436.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1436/50306211/bioinformatics_31_9_1436.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030677029","display_name":"Jing Zhu","orcid":"https://orcid.org/0000-0001-9081-6641"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing Zhu","raw_affiliation_strings":["1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056055301","display_name":"Zhiao Shi","orcid":"https://orcid.org/0000-0002-1220-1219"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiao Shi","raw_affiliation_strings":["1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100378683","display_name":"Jing Wang","orcid":"https://orcid.org/0000-0003-2775-9001"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing Wang","raw_affiliation_strings":["1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100389664","display_name":"Bing Zhang","orcid":"https://orcid.org/0000-0001-8676-2425"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bing Zhang","raw_affiliation_strings":["1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, 2Advanced Computing Center for Research and Education, 3Department of Electrical Engineering and Computer Science and 4Department of Cancer Biology, Vanderbilt University, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100389664"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5601,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.8266288,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"31","issue":"9","first_page":"1436","last_page":"1443"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6328999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6328999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.15240000188350677,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.06509999930858612,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6968054175376892},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6096855401992798},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6048797369003296},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.5848575830459595},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.548869252204895},{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.4832192659378052},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.48171502351760864},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4242897033691406},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4230732321739197},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4170781075954437},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.41280707716941833},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3410688042640686},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3353295922279358},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33395150303840637},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32673993706703186},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.301999568939209},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27559328079223633},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23256096243858337},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2061326503753662},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.16711470484733582},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09210175275802612}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6968054175376892},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6096855401992798},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6048797369003296},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.5848575830459595},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.548869252204895},{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.4832192659378052},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.48171502351760864},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4242897033691406},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4230732321739197},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4170781075954437},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.41280707716941833},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3410688042640686},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3353295922279358},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33395150303840637},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32673993706703186},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.301999568939209},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27559328079223633},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23256096243858337},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2061326503753662},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.16711470484733582},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09210175275802612},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020868","descriptor_name":"Gene Silencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020868","descriptor_name":"Gene Silencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020868","descriptor_name":"Gene Silencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu834","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu834","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1436/50306211/bioinformatics_31_9_1436.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25527095","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25527095","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4410657","is_oa":true,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btu834","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu834","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu834","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/9/1436/50306211/bioinformatics_31_9_1436.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1113670494","display_name":null,"funder_award_id":"U24CA159988","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320309151","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34"},{"id":"https://openalex.org/F4320315952","display_name":"Leidos","ror":"https://ror.org/012cvds63"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104389208.pdf","grobid_xml":"https://content.openalex.org/works/W2104389208.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1971471239","https://openalex.org/W1971875278","https://openalex.org/W1990095531","https://openalex.org/W1999016712","https://openalex.org/W2003091453","https://openalex.org/W2018570668","https://openalex.org/W2023098599","https://openalex.org/W2023944769","https://openalex.org/W2036568936","https://openalex.org/W2042907157","https://openalex.org/W2043398720","https://openalex.org/W2050959874","https://openalex.org/W2057545775","https://openalex.org/W2072167545","https://openalex.org/W2091789479","https://openalex.org/W2094122959","https://openalex.org/W2099363656","https://openalex.org/W2105829583","https://openalex.org/W2112928874","https://openalex.org/W2122863289","https://openalex.org/W2128016314","https://openalex.org/W2131856634","https://openalex.org/W2134719071","https://openalex.org/W2138199375","https://openalex.org/W2145889895","https://openalex.org/W2146303969","https://openalex.org/W2149303776","https://openalex.org/W2149441684","https://openalex.org/W2152167956","https://openalex.org/W2157348185","https://openalex.org/W2158197251","https://openalex.org/W2158485828","https://openalex.org/W2159675211","https://openalex.org/W2163256635","https://openalex.org/W2262414037"],"related_works":["https://openalex.org/W2924366642","https://openalex.org/W3173875945","https://openalex.org/W3159101980","https://openalex.org/W2376705129","https://openalex.org/W2950016824","https://openalex.org/W2090127207","https://openalex.org/W3003192283","https://openalex.org/W2996736193","https://openalex.org/W2909364225","https://openalex.org/W2916929870"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recent":[1],"completion":[2],"of":[3,8,43,53,93,121],"the":[4,20,41,44,70,122,125,142],"global":[5],"proteomic":[6,65],"characterization":[7],"The":[9,57,100,176],"Cancer":[10],"Genome":[11],"Atlas":[12],"(TCGA)":[13],"colorectal":[14],"cancer":[15],"(CRC)":[16],"cohort":[17],"resulted":[18],"in":[19],"first":[21],"tumor":[22,78],"dataset":[23],"with":[24],"complete":[25],"molecular":[26],"measurements":[27],"at":[28,184,194],"DNA,":[29],"RNA":[30],"and":[31,51,66,80,83,88,109,132,150,169],"protein":[32],"levels.":[33],"Using":[34,135],"CRC":[35,59,72,77,178],"as":[36],"a":[37,91,159],"paradigm,":[38],"we":[39,139],"describe":[40],"application":[42],"NetGestalt":[45,58,177],"framework":[46],"to":[47,117],"provide":[48],"easy":[49],"access":[50],"interpretation":[52],"multi-omics":[54],"data.":[55],"RESULTS:":[56],"portal":[60,101,143,179],"includes":[61],"genomic,":[62],"epigenomic,":[63],"transcriptomic,":[64],"clinical":[67],"data":[68,74,98,105,148,156,162,167,191],"for":[69,104],"TCGA":[71],"cohort,":[73],"from":[75],"other":[76],"cohorts":[79],"cell":[81],"lines,":[82],"existing":[84],"knowledge":[85],"on":[86],"pathways":[87],"networks,":[89],"giving":[90],"total":[92],"more":[94],"than":[95],"17":[96],"million":[97],"points.":[99],"provides":[102,146],"features":[103,112],"query,":[106],"upload,":[107],"visualization":[108,131,151],"integration.":[110],"These":[111],"can":[113,180],"be":[114,181],"flexibly":[115],"combined":[116],"serve":[118],"various":[119],"needs":[120],"users,":[123],"maximizing":[124],"synergy":[126],"among":[127],"omics":[128,161,166],"data,":[129],"human":[130],"quantitative":[133],"analysis.":[134],"three":[136],"case":[137],"studies,":[138],"demonstrate":[140],"that":[141],"not":[144],"only":[145],"user-friendly":[147],"query":[149],"but":[152],"also":[153],"enables":[154],"efficient":[155],"integration":[157],"within":[158],"single":[160],"type,":[163],"across":[164],"multiple":[165],"types,":[168],"over":[170],"biological":[171],"networks.":[172],"AVAILABILITY":[173],"AND":[174],"IMPLEMENTATION:":[175],"freely":[182],"accessed":[183],"http://www.netgestalt.org.":[185],"CONTACT:":[186],"bing.zhang@vanderbilt.edu":[187],"SUPPLEMENTARY":[188],"INFORMATION:":[189],"Supplementary":[190],"are":[192],"available":[193],"Bioinformatics":[195],"online.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
