{"id":"https://openalex.org/W2088883875","doi":"https://doi.org/10.1093/bioinformatics/btu824","title":"HYCUD: a computational tool for prediction of effective rotational correlation time in flexible proteins","display_name":"HYCUD: a computational tool for prediction of effective rotational correlation time in flexible proteins","publication_year":2014,"publication_date":"2014-12-12","ids":{"openalex":"https://openalex.org/W2088883875","doi":"https://doi.org/10.1093/bioinformatics/btu824","mag":"2088883875","pmid":"https://pubmed.ncbi.nlm.nih.gov/25505088"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu824","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu824","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1319/49012492/bioinformatics_31_8_1319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1319/49012492/bioinformatics_31_8_1319.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036082816","display_name":"Nasrollah Rezaei\u2010Ghaleh","orcid":"https://orcid.org/0000-0001-6935-6564"},"institutions":[{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4411590659"]},{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Nasrollah Rezaei-Ghaleh","raw_affiliation_strings":["1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I4210131661","https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061103201","display_name":"Frederik Klama","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]},{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4411590659"]},{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210116730"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frederik Klama","raw_affiliation_strings":["1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I4210131661","https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088754054","display_name":"Francesca Munari","orcid":"https://orcid.org/0000-0002-8217-1481"},"institutions":[{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4411590659"]},{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Francesca Munari","raw_affiliation_strings":["1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I4210131661","https://openalex.org/I4210116730"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033249566","display_name":"Markus Zweckstetter","orcid":"https://orcid.org/0000-0002-2536-6581"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4411590659"]},{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus Zweckstetter","raw_affiliation_strings":["1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077 G\u00f6ttingen, Germany, 2Structural Biology in Dementia, German Center for Neurodegenerative Diseases (DZNE), 37077 G\u00f6ttingen, Germany and 3Center for Nanoscale Microscopy and Molecular Physiology of the Brain, University Medical Center G\u00f6ttingen (UMG), 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I4210131661","https://openalex.org/I4210116730"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036082816"],"corresponding_institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I4210116730","https://openalex.org/I4210131661"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8537,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.73135271,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"31","issue":"8","first_page":"1319","last_page":"1321"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.839900016784668,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.839900016784668,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.03970000147819519,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.0142000000923872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7580265998840332},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6305462718009949},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6217311024665833},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6003814935684204},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5894114971160889},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.50826495885849},{"id":"https://openalex.org/keywords/rotation","display_name":"Rotation (mathematics)","score":0.48556944727897644},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.4552404582500458},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.44800692796707153},{"id":"https://openalex.org/keywords/correlation-function","display_name":"Correlation function (quantum field theory)","score":0.43276044726371765},{"id":"https://openalex.org/keywords/coupling","display_name":"Coupling (piping)","score":0.4292903542518616},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3970143496990204},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3944847583770752},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18133780360221863},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.15764880180358887},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1533496081829071},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12803861498832703},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12389799952507019},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1112547218799591}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7580265998840332},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6305462718009949},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6217311024665833},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6003814935684204},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5894114971160889},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.50826495885849},{"id":"https://openalex.org/C74050887","wikidata":"https://www.wikidata.org/wiki/Q848368","display_name":"Rotation (mathematics)","level":2,"score":0.48556944727897644},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.4552404582500458},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.44800692796707153},{"id":"https://openalex.org/C53622274","wikidata":"https://www.wikidata.org/wiki/Q2496679","display_name":"Correlation function (quantum field theory)","level":3,"score":0.43276044726371765},{"id":"https://openalex.org/C131584629","wikidata":"https://www.wikidata.org/wiki/Q4308705","display_name":"Coupling (piping)","level":2,"score":0.4292903542518616},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3970143496990204},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3944847583770752},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18133780360221863},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.15764880180358887},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1533496081829071},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12803861498832703},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12389799952507019},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1112547218799591},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C168110828","wikidata":"https://www.wikidata.org/wiki/Q1331626","display_name":"Spectral density","level":2,"score":0.0},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012269","descriptor_name":"Ribosomal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012269","descriptor_name":"Ribosomal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012269","descriptor_name":"Ribosomal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012399","descriptor_name":"Rotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012399","descriptor_name":"Rotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012399","descriptor_name":"Rotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu824","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu824","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1319/49012492/bioinformatics_31_8_1319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25505088","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25505088","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escidoc.org:escidoc:2079532","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0024-5CE3-4","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pub.dzne.de:137928","is_oa":false,"landing_page_url":"https://pub.dzne.de/search?p=id:%22DZNE-2020-04250%22","pdf_url":null,"source":{"id":"https://openalex.org/S7407051172","display_name":"DZNE Pub","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 31(8), 1319-1321 (2015). doi:10.1093/bioinformatics/btu824","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu824","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu824","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1319/49012492/bioinformatics_31_8_1319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2088883875.pdf","grobid_xml":"https://content.openalex.org/works/W2088883875.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1965691764","https://openalex.org/W1966849099","https://openalex.org/W1977315111","https://openalex.org/W1977925707","https://openalex.org/W1994181920","https://openalex.org/W1995905831","https://openalex.org/W2000296220","https://openalex.org/W2001012072","https://openalex.org/W2004300752","https://openalex.org/W2013679246","https://openalex.org/W2015182359","https://openalex.org/W2019127626","https://openalex.org/W2026042608","https://openalex.org/W2038588048","https://openalex.org/W2045213503","https://openalex.org/W2055957948","https://openalex.org/W2056734463","https://openalex.org/W2072654958","https://openalex.org/W2107970641","https://openalex.org/W2152276494","https://openalex.org/W2153745204","https://openalex.org/W2314394029","https://openalex.org/W2331602804"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2039578808"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"large":[2],"fraction":[3],"of":[4,14,25,34,46,59,62,69,79],"eukaryotic":[5],"proteins":[6],"contain":[7],"unstructured":[8],"tails":[9],"or":[10,126],"linkers.":[11,111],"The":[12,31,77,115],"presence":[13],"flexible":[15,39],"regions":[16],"allows":[17],"these":[18],"systems":[19,41],"to":[20,49,86,100],"experience":[21],"a":[22,43,65],"high":[23],"level":[24],"mobility":[26],"facilitating":[27],"their":[28,51],"biological":[29],"function.":[30],"complex":[32],"nature":[33],"protein":[35,89],"rotation":[36],"in":[37,74,109],"such":[38],"modular":[40],"precludes":[42],"straightforward":[44],"application":[45,85],"hydrodynamic":[47],"methods":[48],"calculate":[50],"rotational":[52,71],"motional":[53],"properties.":[54],"We":[55],"describe":[56],"the":[57,87],"workflow":[58],"HYdrodynamic":[60],"CoUpling":[61],"Domains":[63],"(HYCUD),":[64],"program":[66],"for":[67],"prediction":[68],"effective":[70],"correlation":[72,92],"times":[73,93],"multidomain":[75],"proteins.":[76],"usage":[78],"HYCUD":[80,96],"is":[81,132],"demonstrated":[82],"by":[83,95,106],"its":[84],"ribosomal":[88],"L7/L12.":[90],"Rotational":[91],"predicted":[94],"might":[97],"be":[98],"used":[99],"detect":[101],"molecular":[102],"switch":[103],"events":[104],"mediated":[105],"disorder-order":[107],"transitions":[108],"interdomain":[110],"AVAILABILITY":[112],"AND":[113],"IMPLEMENTATION:":[114],"source":[116],"code":[117],"and":[118],"documentation":[119],"are":[120],"available":[121,133],"at":[122,134],"www.mpibpc.mpg.de/106144/software.":[123],"CONTACT:":[124],"mzwecks@gwdg.de":[125],"nare@nmr.mpibpc.mpg.de":[127],"SUPPLEMENTARY":[128],"INFORMATION:":[129],"Supplementary":[130],"material":[131],"Bioinformatics":[135],"online.":[136]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":5},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
