{"id":"https://openalex.org/W2949145039","doi":"https://doi.org/10.1093/bioinformatics/btu802","title":"QuASAR: quantitative allele-specific analysis of reads","display_name":"QuASAR: quantitative allele-specific analysis of reads","publication_year":2014,"publication_date":"2014-12-04","ids":{"openalex":"https://openalex.org/W2949145039","doi":"https://doi.org/10.1093/bioinformatics/btu802","mag":"2949145039","pmid":"https://pubmed.ncbi.nlm.nih.gov/25480375"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu802","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu802","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028747626","display_name":"Chris T. Harvey","orcid":null},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris T. Harvey","raw_affiliation_strings":["1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I185443292","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025934105","display_name":"Gregory A. Moyerbrailean","orcid":null},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory A. Moyerbrailean","raw_affiliation_strings":["1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I185443292","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047138742","display_name":"Gordon O. Davis","orcid":null},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gordon O. Davis","raw_affiliation_strings":["1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I185443292","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089187929","display_name":"Xiaoquan Wen","orcid":"https://orcid.org/0000-0001-8990-2737"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoquan Wen","raw_affiliation_strings":["1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I185443292","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045777431","display_name":"Francesca Luca","orcid":"https://orcid.org/0000-0001-8252-9052"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Francesca Luca","raw_affiliation_strings":["1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I185443292","https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035820223","display_name":"Roger Piqu\u00e9-Regi","orcid":"https://orcid.org/0000-0002-1262-2275"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger Pique-Regi","raw_affiliation_strings":["1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Molecular Medicine and Genetics, Department of Obstetrics and Gynecology, Wayne State University, 540\u2009E Canfield, Scott Hall, Detroit, MI 48201, USA and 2Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I185443292","https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5045777431"],"corresponding_institution_ids":["https://openalex.org/I185443292","https://openalex.org/I27837315"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.54,"has_fulltext":false,"cited_by_count":90,"citation_normalized_percentile":{"value":0.96358128,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"31","issue":"8","first_page":"1235","last_page":"1242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9388999938964844,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9388999938964844,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.015699999406933784,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.009200000204145908,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6336579918861389},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.5979481339454651},{"id":"https://openalex.org/keywords/expression-quantitative-trait-loci","display_name":"Expression quantitative trait loci","score":0.5863466262817383},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.5691142678260803},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5562103390693665},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5225062966346741},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5170807838439941},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.42565441131591797},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3446420431137085},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3061659336090088},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.2698623239994049},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14891958236694336}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6336579918861389},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.5979481339454651},{"id":"https://openalex.org/C168393362","wikidata":"https://www.wikidata.org/wiki/Q5421706","display_name":"Expression quantitative trait loci","level":5,"score":0.5863466262817383},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.5691142678260803},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5562103390693665},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5225062966346741},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5170807838439941},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.42565441131591797},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3446420431137085},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3061659336090088},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.2698623239994049},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14891958236694336}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu802","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu802","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25480375","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25480375","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:3799930","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4393517","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1320491242","display_name":null,"funder_award_id":"14SDG20450118","funder_id":"https://openalex.org/F4320306230","funder_display_name":"American Heart Association"},{"id":"https://openalex.org/G2067920560","display_name":null,"funder_award_id":"R01 GM109215","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5870863688","display_name":null,"funder_award_id":"1R01GM109215-01","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306230","display_name":"American Heart Association","ror":"https://ror.org/013kjyp64"},{"id":"https://openalex.org/F4320309272","display_name":"Wayne State University","ror":"https://ror.org/01070mq45"},{"id":"https://openalex.org/F4320309626","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1963911710","https://openalex.org/W1972029972","https://openalex.org/W1972698844","https://openalex.org/W1987623404","https://openalex.org/W1993023683","https://openalex.org/W1993629674","https://openalex.org/W2004834404","https://openalex.org/W2009178411","https://openalex.org/W2012697072","https://openalex.org/W2019983262","https://openalex.org/W2024052061","https://openalex.org/W2025302103","https://openalex.org/W2025943989","https://openalex.org/W2027455260","https://openalex.org/W2029530775","https://openalex.org/W2029892338","https://openalex.org/W2033202128","https://openalex.org/W2043170768","https://openalex.org/W2053600267","https://openalex.org/W2058454627","https://openalex.org/W2062018774","https://openalex.org/W2065020285","https://openalex.org/W2069298307","https://openalex.org/W2091303550","https://openalex.org/W2100640908","https://openalex.org/W2103441770","https://openalex.org/W2105381419","https://openalex.org/W2112087830","https://openalex.org/W2113312463","https://openalex.org/W2138253007","https://openalex.org/W2141458291","https://openalex.org/W2150221860","https://openalex.org/W2152406028","https://openalex.org/W2153725473","https://openalex.org/W2159730169","https://openalex.org/W2164339823","https://openalex.org/W2164531600","https://openalex.org/W2165243615","https://openalex.org/W2167668076","https://openalex.org/W2168133698","https://openalex.org/W2186937676","https://openalex.org/W2797808779","https://openalex.org/W3098257687"],"related_works":["https://openalex.org/W2087522537","https://openalex.org/W2164780420","https://openalex.org/W2378369506","https://openalex.org/W2995716764","https://openalex.org/W2161056048","https://openalex.org/W2995369528","https://openalex.org/W2377518790","https://openalex.org/W2394359576","https://openalex.org/W2463477745","https://openalex.org/W2349105149"],"abstract_inverted_index":{"MOTIVATION:":[0],"Expression":[1],"quantitative":[2,141],"trait":[3],"loci":[4],"(eQTL)":[5],"studies":[6,30],"have":[7],"discovered":[8],"thousands":[9],"of":[10,21,25,40,46,59,78,92,144],"genetic":[11,60],"variants":[12],"that":[13,122,176,211],"regulate":[14],"gene":[15,63],"expression,":[16,64],"enabling":[17],"a":[18,52,67,93,146,214],"better":[19],"understanding":[20],"the":[22,57,76,89,111,134,167,170],"functional":[23],"role":[24],"non-coding":[26],"sequences.":[27],"However,":[28,115],"eQTL":[29],"are":[31,117,196,222],"costly,":[32],"requiring":[33],"large":[34],"sample":[35],"sizes":[36],"and":[37,87,126,156,182],"genome-wide":[38],"genotyping":[39],"each":[41,82],"sample.":[42],"In":[43,97],"contrast,":[44],"analysis":[45,143,219],"allele-specific":[47,142],"expression":[48],"(ASE)":[49],"is":[50,71,102,213,237],"becoming":[51],"popular":[53],"approach":[54],"to":[55],"detect":[56],"effect":[58],"variation":[61],"on":[62],"even":[65],"within":[66],"single":[68],"individual.":[69],"This":[70],"typically":[72],"achieved":[73],"by":[74],"counting":[75],"number":[77],"RNA-seq":[79,112],"reads":[80,113],"matching":[81],"allele":[83],"at":[84,206,239],"heterozygous":[85,154],"sites":[86],"testing":[88],"null":[90],"hypothesis":[91],"1:1":[94],"allelic":[95,183],"ratio.":[96],"principle,":[98],"when":[99,220],"genotype":[100,135,171],"information":[101],"not":[103,223],"readily":[104],"available,":[105],"it":[106],"could":[107],"be":[108],"inferred":[109],"from":[110],"directly.":[114],"there":[116],"currently":[118],"no":[119],"existing":[120],"methods":[121],"jointly":[123,152],"infer":[124],"genotypes":[125,155,195,221],"conduct":[127],"ASE":[128,161,218],"inference,":[129],"while":[130,173],"considering":[131],"uncertainty":[132,168],"in":[133,169,180],"calls.":[136],"RESULTS:":[137],"We":[138,185],"present":[139],"QuASAR,":[140],"reads,":[145],"novel":[147],"statistical":[148],"learning":[149],"method":[150,188],"for":[151,192,199,217],"detecting":[153],"inferring":[157],"ASE.":[158],"The":[159],"proposed":[160],"inference":[162],"step":[163],"takes":[164],"into":[165],"consideration":[166],"calls,":[172],"including":[174],"parameters":[175],"model":[177],"base-call":[178],"errors":[179],"sequencing":[181,208],"over-dispersion.":[184],"validated":[186],"our":[187],"with":[189,203],"experimental":[190],"data":[191],"which":[193],"high-quality":[194],"available.":[197,224],"Results":[198],"an":[200],"additional":[201],"dataset":[202],"multiple":[204],"replicates":[205],"different":[207],"depths":[209],"demonstrate":[210],"QuASAR":[212],"powerful":[215],"tool":[216],"AVAILABILITY":[225],"AND":[226],"IMPLEMENTATION:":[227],"http://github.com/piquelab/QuASAR.":[228],"CONTACT:":[229],"fluca@wayne.edu":[230],"or":[231],"rpique@wayne.edu":[232],"SUPPLEMENTARY":[233],"INFORMATION:":[234],"Supplementary":[235],"Material":[236],"available":[238],"Bioinformatics":[240],"online.":[241]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":10}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
