{"id":"https://openalex.org/W2128803939","doi":"https://doi.org/10.1093/bioinformatics/btu795","title":"Computer-assisted curation of a human regulatory core network from the biological literature","display_name":"Computer-assisted curation of a human regulatory core network from the biological literature","publication_year":2014,"publication_date":"2014-11-29","ids":{"openalex":"https://openalex.org/W2128803939","doi":"https://doi.org/10.1093/bioinformatics/btu795","mag":"2128803939","pmid":"https://pubmed.ncbi.nlm.nih.gov/25433699"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu795","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu795","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1258/49012807/bioinformatics_31_8_1258.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1258/49012807/bioinformatics_31_8_1258.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025893671","display_name":"Philippe Thomas","orcid":"https://orcid.org/0000-0001-9136-9660"},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","HU"],"is_corresponding":true,"raw_author_name":"Philippe Thomas","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042433172","display_name":"Pawel Durek","orcid":"https://orcid.org/0000-0002-6179-0670"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Pawel Durek","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026073384","display_name":"Ill\u00e9s Solt","orcid":null},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Ill\u00e9s Solt","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084856882","display_name":"Bertram Klinger","orcid":"https://orcid.org/0000-0003-0242-1506"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Bertram Klinger","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015553514","display_name":"Franziska Witzel","orcid":null},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Franziska Witzel","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022646909","display_name":"Pascal Schulthess","orcid":"https://orcid.org/0000-0002-7768-8507"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Pascal Schulthess","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077728152","display_name":"Yvonne Mayer","orcid":null},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Yvonne Mayer","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070226189","display_name":"Domonkos Tikk","orcid":null},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Domonkos Tikk","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078717142","display_name":"Nils Bl\u00fcthgen","orcid":"https://orcid.org/0000-0002-0171-7447"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Nils Bl\u00fcthgen","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Ulf Leser","raw_affiliation_strings":["1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"1 Humboldt-Universit\u00e4t zu Berlin, Institute for Computer Science, Knowledge Management in Bioinformatics, 10099 Berlin, Germany, 2Institute of Pathology, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 3Deutsches Rheuma Forschungszentrum, Charit\u00e9platz 1, 10117 Berlin, Germany, 4Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, 1117 Budapest, Hungary and 5Integrative Research Institute for the Life Sciences, Humboldt Universit\u00e4t zu Berlin, Philippstr. 13 Haus 18, 10115 Berlin, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I29770179"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5025893671"],"corresponding_institution_ids":["https://openalex.org/I29770179","https://openalex.org/I39343248","https://openalex.org/I7877124"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.713,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.70841871,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"31","issue":"8","first_page":"1258","last_page":"1266"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6746824979782104},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.5879350304603577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49132195115089417},{"id":"https://openalex.org/keywords/common-core","display_name":"Common core","score":0.4672040343284607},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.44089967012405396},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35584133863449097},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23269203305244446},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.09299230575561523}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6746824979782104},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.5879350304603577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49132195115089417},{"id":"https://openalex.org/C2993829489","wikidata":"https://www.wikidata.org/wiki/Q5153317","display_name":"Common core","level":3,"score":0.4672040343284607},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.44089967012405396},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35584133863449097},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23269203305244446},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.09299230575561523}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu795","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu795","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1258/49012807/bioinformatics_31_8_1258.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25433699","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25433699","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:ul:oai:scholarlypublications.universiteitleiden.nl:item_2855932","is_oa":true,"landing_page_url":"http://hdl.handle.net/1887/41671","pdf_url":"http://bioinformatics.oxfordjournals.org/content/31/8/1258","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BIOINFORMATICS, 31(8), 1258 - 1266","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2855932","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/content/31/8/1258","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BIOINFORMATICS","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu795","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu795","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1258/49012807/bioinformatics_31_8_1258.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G6077999215","display_name":null,"funder_award_id":"01GQ1001C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6777017359","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128803939.pdf","grobid_xml":"https://content.openalex.org/works/W2128803939.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W228431503","https://openalex.org/W1480685409","https://openalex.org/W1493270114","https://openalex.org/W1498990157","https://openalex.org/W1506588750","https://openalex.org/W1512809401","https://openalex.org/W1965302838","https://openalex.org/W1965409500","https://openalex.org/W1973352244","https://openalex.org/W2011282682","https://openalex.org/W2021536610","https://openalex.org/W2032566933","https://openalex.org/W2043748764","https://openalex.org/W2048059249","https://openalex.org/W2053724458","https://openalex.org/W2060399360","https://openalex.org/W2061674320","https://openalex.org/W2069733150","https://openalex.org/W2074640468","https://openalex.org/W2081087784","https://openalex.org/W2084243524","https://openalex.org/W2087602949","https://openalex.org/W2092988184","https://openalex.org/W2094061585","https://openalex.org/W2098412979","https://openalex.org/W2100025044","https://openalex.org/W2109110326","https://openalex.org/W2109473868","https://openalex.org/W2110699703","https://openalex.org/W2111164126","https://openalex.org/W2112262143","https://openalex.org/W2118801375","https://openalex.org/W2121075355","https://openalex.org/W2127057035","https://openalex.org/W2129113459","https://openalex.org/W2131520733","https://openalex.org/W2147566730","https://openalex.org/W2148499186","https://openalex.org/W2150043205","https://openalex.org/W2150557879","https://openalex.org/W2155592392","https://openalex.org/W2166111585","https://openalex.org/W2168264491","https://openalex.org/W2169304553","https://openalex.org/W2172141254","https://openalex.org/W2259938310","https://openalex.org/W2550419310","https://openalex.org/W2914431807","https://openalex.org/W2923652028","https://openalex.org/W6609162758","https://openalex.org/W6628661417","https://openalex.org/W6629460809","https://openalex.org/W6630208708","https://openalex.org/W6658704000","https://openalex.org/W6678152709","https://openalex.org/W6678987472"],"related_works":["https://openalex.org/W3158538495","https://openalex.org/W2045815042","https://openalex.org/W2092226129","https://openalex.org/W2913619905","https://openalex.org/W3125758369","https://openalex.org/W2375898439","https://openalex.org/W2028287801","https://openalex.org/W2069382761","https://openalex.org/W2061774045","https://openalex.org/W3128853513"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}