{"id":"https://openalex.org/W2151065895","doi":"https://doi.org/10.1093/bioinformatics/btu773","title":"The Victor C++ library for protein representation and advanced manipulation","display_name":"The Victor C++ library for protein representation and advanced manipulation","publication_year":2014,"publication_date":"2014-11-19","ids":{"openalex":"https://openalex.org/W2151065895","doi":"https://doi.org/10.1093/bioinformatics/btu773","mag":"2151065895","pmid":"https://pubmed.ncbi.nlm.nih.gov/25414364"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu773","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu773","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1138/50306048/bioinformatics_31_7_1138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1138/50306048/bioinformatics_31_7_1138.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002583364","display_name":"Layla Hirsh","orcid":"https://orcid.org/0000-0002-8215-6716"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Layla Hirsh","raw_affiliation_strings":["1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000882827","display_name":"Damiano Piovesan","orcid":"https://orcid.org/0000-0001-8210-2390"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Damiano Piovesan","raw_affiliation_strings":["1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087447838","display_name":"Manuel Giollo","orcid":"https://orcid.org/0000-0001-9434-2383"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manuel Giollo","raw_affiliation_strings":["1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029176853","display_name":"Carlo Ferrari","orcid":"https://orcid.org/0000-0003-3665-0446"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carlo Ferrari","raw_affiliation_strings":["1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvio C. E. Tosatto","raw_affiliation_strings":["1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, 35131 Padova, Italy, 2Department of Engineering, Pontificia Universidad Cat\u00f3lica del Per\u00fa, San Miguel, 32 Lima, Per\u00fa and 3Department of Information Engineering, University of Padua, Via Gradenigo 6, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5066560665"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2792,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60202479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"31","issue":"7","first_page":"1138","last_page":"1140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7390000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7390000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.2150000035762787,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.0032999999821186066,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6777808666229248},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6296193599700928},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41811349987983704},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.41349244117736816},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3830704987049103},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3368809223175049},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3334140181541443},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20732173323631287}],"concepts":[{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6777808666229248},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6296193599700928},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41811349987983704},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.41349244117736816},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3830704987049103},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3368809223175049},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3334140181541443},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20732173323631287},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046609","descriptor_name":"Libraries, Digital","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046609","descriptor_name":"Libraries, Digital","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046609","descriptor_name":"Libraries, Digital","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu773","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu773","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1138/50306048/bioinformatics_31_7_1138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25414364","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25414364","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research.unipd.it:11577/3158199","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3158199","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu773","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu773","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/7/1138/50306048/bioinformatics_31_7_1138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321966","display_name":"Universit\u00e0 degli Studi di Padova","ror":"https://ror.org/00240q980"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151065895.pdf","grobid_xml":"https://content.openalex.org/works/W2151065895.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1649645444","https://openalex.org/W1983497040","https://openalex.org/W2008556223","https://openalex.org/W2008708467","https://openalex.org/W2029667189","https://openalex.org/W2030028095","https://openalex.org/W2075165825","https://openalex.org/W2103273582","https://openalex.org/W2109801072","https://openalex.org/W2111749857","https://openalex.org/W2114981306","https://openalex.org/W2119228200","https://openalex.org/W2119915462","https://openalex.org/W2122959020","https://openalex.org/W2125443524","https://openalex.org/W2129434797","https://openalex.org/W2139300598","https://openalex.org/W2140145408","https://openalex.org/W2147762208","https://openalex.org/W2149478651","https://openalex.org/W2153606085","https://openalex.org/W2156460914","https://openalex.org/W2157773221","https://openalex.org/W2163176800","https://openalex.org/W2167257571","https://openalex.org/W2168508791","https://openalex.org/W2171047927","https://openalex.org/W2615785200"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2795079307","https://openalex.org/W2793058541","https://openalex.org/W3118638206","https://openalex.org/W1983629434","https://openalex.org/W4324271173","https://openalex.org/W1967645776","https://openalex.org/W2352227742","https://openalex.org/W4390679071","https://openalex.org/W1480923359"],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein":[1],"sequence":[2,58],"and":[3,6,43,60,76,90,103,106,115],"structure":[4],"representation":[5],"manipulation":[7],"require":[8],"dedicated":[9,34],"software":[10],"libraries":[11],"to":[12,35,39],"support":[13],"methods":[14],"of":[15],"increasing":[16],"complexity.":[17],"Here,":[18],"we":[19],"describe":[20],"the":[21,47,69],"VIrtual":[22],"Constrution":[23],"TOol":[24],"for":[25,78],"pRoteins":[26],"(Victor)":[27],"C++":[28,113],"library,":[29],"an":[30],"open":[31],"source":[32,88],"platform":[33],"enabling":[36],"inexperienced":[37],"users":[38],"develop":[40],"advanced":[41],"tools":[42],"gathering":[44],"contributions":[45],"from":[46,125],"community.":[48],"The":[49,112],"provided":[50,82],"application":[51],"examples":[52,105],"cover":[53],"statistical":[54],"energy":[55],"potentials,":[56],"profile-profile":[57],"alignments":[59],"ab":[61],"initio":[62],"loop":[63],"modeling.":[64],"Victor":[65],"was":[66],"used":[67],"over":[68],"last":[70],"15":[71],"years":[72],"in":[73],"several":[74],"publications":[75],"optimized":[77],"efficiency.":[79],"It":[80],"is":[81],"as":[83],"a":[84,98,120],"GitHub":[85],"repository":[86],"with":[87,100],"files":[89,102],"unit":[91],"tests,":[92],"plus":[93],"extensive":[94],"online":[95,116],"documentation,":[96,117],"including":[97],"Wiki":[99],"help":[101],"tutorials,":[104],"Doxygen":[107],"documentation.":[108],"AVAILABILITY":[109],"AND":[110],"IMPLEMENTATION:":[111],"library":[114],"distributed":[118],"under":[119],"GPL":[121],"license":[122],"are":[123],"available":[124],"URL:":[126],"http://protein.bio.unipd.it/victor/.":[127]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}