{"id":"https://openalex.org/W2165389621","doi":"https://doi.org/10.1093/bioinformatics/btu771","title":"Population-based structural variation discovery with Hydra-Multi","display_name":"Population-based structural variation discovery with Hydra-Multi","publication_year":2014,"publication_date":"2014-12-02","ids":{"openalex":"https://openalex.org/W2165389621","doi":"https://doi.org/10.1093/bioinformatics/btu771","mag":"2165389621","pmid":"https://pubmed.ncbi.nlm.nih.gov/25527832"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu771","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu771","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1286/17123122/btu771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1286/17123122/btu771.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005289188","display_name":"Michael Lindberg","orcid":"https://orcid.org/0000-0002-7393-8214"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael R. Lindberg","raw_affiliation_strings":["1 Department of Biochemistry and Molecular Genetics, 2Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA, 3Department of Medicine, 4The Genome Institute, Washington University School of Medicine, St. Louis MO, USA and 5Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Molecular Genetics, 2Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA, 3Department of Medicine, 4The Genome Institute, Washington University School of Medicine, St. Louis MO, USA and 5Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026920706","display_name":"Ira M. Hall","orcid":"https://orcid.org/0000-0003-4442-6655"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ira M. Hall","raw_affiliation_strings":["1 Department of Biochemistry and Molecular Genetics, 2Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA, 3Department of Medicine, 4The Genome Institute, Washington University School of Medicine, St. Louis MO, USA and 5Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Molecular Genetics, 2Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA, 3Department of Medicine, 4The Genome Institute, Washington University School of Medicine, St. Louis MO, USA and 5Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079803961","display_name":"Aaron R. Quinlan","orcid":"https://orcid.org/0000-0003-1756-0859"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aaron R. Quinlan","raw_affiliation_strings":["1 Department of Biochemistry and Molecular Genetics, 2Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA, 3Department of Medicine, 4The Genome Institute, Washington University School of Medicine, St. Louis MO, USA and 5Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry and Molecular Genetics, 2Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA, 3Department of Medicine, 4The Genome Institute, Washington University School of Medicine, St. Louis MO, USA and 5Department of Public Health Sciences, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5026920706","https://openalex.org/A5079803961"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.2564,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.79556028,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"31","issue":"8","first_page":"1286","last_page":"1289"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4740999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4740999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.3479999899864197,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.08399999886751175,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7335526943206787},{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.6955291032791138},{"id":"https://openalex.org/keywords/1000-genomes-project","display_name":"1000 Genomes Project","score":0.5477516055107117},{"id":"https://openalex.org/keywords/structural-variation","display_name":"Structural variation","score":0.5239158868789673},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5188083052635193},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4991738796234131},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49093392491340637},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4779632091522217},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4218141734600067},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41231569647789},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25124669075012207},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.14231684803962708}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7335526943206787},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.6955291032791138},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.5477516055107117},{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.5239158868789673},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5188083052635193},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4991738796234131},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49093392491340637},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4779632091522217},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4218141734600067},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41231569647789},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25124669075012207},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.14231684803962708},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006829","descriptor_name":"Hydra","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006829","descriptor_name":"Hydra","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006829","descriptor_name":"Hydra","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006829","descriptor_name":"Hydra","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006829","descriptor_name":"Hydra","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006829","descriptor_name":"Hydra","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu771","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu771","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1286/17123122/btu771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25527832","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25527832","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4393510","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4393510","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu771","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu771","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/8/1286/17123122/btu771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"id":"https://metadata.un.org/sdg/1","display_name":"No poverty"}],"awards":[{"id":"https://openalex.org/G2633639783","display_name":null,"funder_award_id":"1R01HG006693-01","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3070476645","display_name":null,"funder_award_id":"DP2OD006493-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3419910145","display_name":null,"funder_award_id":"T32 GM008136","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165389621.pdf","grobid_xml":"https://content.openalex.org/works/W2165389621.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1495978708","https://openalex.org/W2011484895","https://openalex.org/W2056571985","https://openalex.org/W2103011829","https://openalex.org/W2116126626","https://openalex.org/W2117460005","https://openalex.org/W2119180969","https://openalex.org/W2133112449","https://openalex.org/W2138189131","https://openalex.org/W2146005104","https://openalex.org/W2151794156","https://openalex.org/W2161815151","https://openalex.org/W6629836732"],"related_works":["https://openalex.org/W2529614973","https://openalex.org/W1882576502","https://openalex.org/W2156272823","https://openalex.org/W2951648583","https://openalex.org/W2160515792","https://openalex.org/W2754643976","https://openalex.org/W2842676186","https://openalex.org/W4213020450","https://openalex.org/W4294012180","https://openalex.org/W2043864615"],"abstract_inverted_index":{"UNLABELLED:":[0],"Current":[1],"strategies":[2],"for":[3],"SNP":[4],"and":[5,17,55,79,107,112,124,139],"INDEL":[6],"discovery":[7],"incorporate":[8],"sequence":[9],"alignments":[10],"from":[11,66],"multiple":[12],"individuals":[13],"to":[14,95],"maximize":[15],"sensitivity":[16],"specificity.":[18],"It":[19],"is":[20,135,140],"widely":[21],"accepted":[22],"that":[23,75,88],"this":[24],"approach":[25,87],"also":[26],"improves":[27],"structural":[28],"variant":[29],"(SV)":[30],"detection.":[31],"However,":[32],"multisample":[33,90],"SV":[34,44,51,91],"analysis":[35,81,92],"has":[36],"been":[37],"stymied":[38],"by":[39,119,125],"the":[40,71],"fundamental":[41],"difficulties":[42],"of":[43,73,97],"calling,":[45],"e.g.":[46],"library":[47],"insert":[48],"size":[49],"variability,":[50],"alignment":[52],"signal":[53],"integration":[54],"detecting":[56],"long-range":[57],"genomic":[58],"rearrangements":[59],"involving":[60],"disjoint":[61],"loci.":[62],"Extant":[63],"tools":[64],"suffer":[65],"poor":[67],"scalability,":[68],"which":[69],"limits":[70],"number":[72],"genomes":[74,99],"can":[76],"be":[77],"co-analyzed":[78],"complicates":[80],"workflows.":[82],"We":[83],"have":[84],"developed":[85],"an":[86],"enables":[89],"in":[93,137],"hundreds":[94],"thousands":[96],"human":[98],"using":[100,114],"commodity":[101],"hardware.":[102],"Here,":[103],"we":[104],"describe":[105],"Hydra-Multi":[106,134],"measure":[108],"its":[109],"accuracy,":[110],"speed":[111],"scalability":[113],"publicly":[115],"available":[116,142,154],"datasets":[117],"provided":[118],"The":[120,126],"1000":[121],"Genomes":[122],"Project":[123],"Cancer":[127],"Genome":[128],"Atlas":[129],"(TCGA).":[130],"AVAILABILITY":[131],"AND":[132],"IMPLEMENTATION:":[133],"written":[136],"C++":[138],"freely":[141],"at":[143,155],"https://github.com/arq5x/Hydra.":[144],"CONTACT:":[145],"aaronquinlan@gmail.com":[146],"or":[147],"ihall@genome.wustl.edu":[148],"SUPPLEMENTARY":[149],"INFORMATION:":[150],"Supplementary":[151],"data":[152],"are":[153],"Bioinformatics":[156],"online.":[157]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
