{"id":"https://openalex.org/W2131813051","doi":"https://doi.org/10.1093/bioinformatics/btu762","title":"EPGA: <i>de novo</i> assembly using the distributions of reads and insert size","display_name":"EPGA: <i>de novo</i> assembly using the distributions of reads and insert size","publication_year":2014,"publication_date":"2014-11-17","ids":{"openalex":"https://openalex.org/W2131813051","doi":"https://doi.org/10.1093/bioinformatics/btu762","mag":"2131813051","pmid":"https://pubmed.ncbi.nlm.nih.gov/25406329"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu762","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu762","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/825/17127245/btu762.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/825/17127245/btu762.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100422484","display_name":"Junwei Luo","orcid":"https://orcid.org/0000-0001-6841-9893"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CA","CN","US"],"is_corresponding":true,"raw_author_name":"Junwei Luo","raw_affiliation_strings":["1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA","institution_ids":["https://openalex.org/I4210166499","https://openalex.org/I181565077","https://openalex.org/I32625721","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CA","CN","US"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA","institution_ids":["https://openalex.org/I4210166499","https://openalex.org/I181565077","https://openalex.org/I32625721","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115595967","display_name":"Zhen Zhang","orcid":"https://orcid.org/0000-0002-0647-4253"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CA","CN","US"],"is_corresponding":false,"raw_author_name":"Zhen Zhang","raw_affiliation_strings":["1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA","institution_ids":["https://openalex.org/I4210166499","https://openalex.org/I181565077","https://openalex.org/I32625721","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CA","CN","US"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA","institution_ids":["https://openalex.org/I4210166499","https://openalex.org/I181565077","https://openalex.org/I32625721","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CA","CN","US"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA","institution_ids":["https://openalex.org/I4210166499","https://openalex.org/I181565077","https://openalex.org/I32625721","https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["CA","CN","US"],"is_corresponding":false,"raw_author_name":"Yi Pan","raw_affiliation_strings":["1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA"],"affiliations":[{"raw_affiliation_string":"1 School of Information Science and Engineering, Central South University, ChangSha 410083, China, 2College of Computer Science and Technology, Henan Polytechnic University, JiaoZuo, 454000, China, 3Division of Biomedical Engineering, University of Saskatchewan, Saskatchewan S7N 5A9, Canada and 4Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA","institution_ids":["https://openalex.org/I4210166499","https://openalex.org/I181565077","https://openalex.org/I32625721","https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100422484"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I181565077","https://openalex.org/I32625721","https://openalex.org/I4210166499"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1155,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.77416318,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"31","issue":"6","first_page":"825","last_page":"833"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.9381997585296631},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.7901002764701843},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.730416476726532},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.6503258943557739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6124497652053833},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5302072763442993},{"id":"https://openalex.org/keywords/insert","display_name":"Insert (composites)","score":0.5157566070556641},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.49697354435920715},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.4802189767360687},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.43167123198509216},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.4289695620536804},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.421690434217453},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33439308404922485},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3323063850402832},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28526830673217773},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.21455496549606323},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18727892637252808},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1808146834373474},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11948889493942261}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.9381997585296631},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.7901002764701843},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.730416476726532},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.6503258943557739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6124497652053833},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5302072763442993},{"id":"https://openalex.org/C2780098074","wikidata":"https://www.wikidata.org/wiki/Q6037362","display_name":"Insert (composites)","level":2,"score":0.5157566070556641},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49697354435920715},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.4802189767360687},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.43167123198509216},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.4289695620536804},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.421690434217453},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33439308404922485},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3323063850402832},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28526830673217773},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.21455496549606323},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18727892637252808},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1808146834373474},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11948889493942261},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu762","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu762","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/825/17127245/btu762.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25406329","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25406329","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu762","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu762","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/825/17127245/btu762.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131813051.pdf","grobid_xml":"https://content.openalex.org/works/W2131813051.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1598134722","https://openalex.org/W1966822396","https://openalex.org/W1982827785","https://openalex.org/W1995663053","https://openalex.org/W2010361633","https://openalex.org/W2022986961","https://openalex.org/W2052236073","https://openalex.org/W2061338306","https://openalex.org/W2068342504","https://openalex.org/W2097529842","https://openalex.org/W2113287691","https://openalex.org/W2117201299","https://openalex.org/W2120902911","https://openalex.org/W2121911035","https://openalex.org/W2126552018","https://openalex.org/W2127067063","https://openalex.org/W2127651281","https://openalex.org/W2127768708","https://openalex.org/W2129933858","https://openalex.org/W2135361281","https://openalex.org/W2136651963","https://openalex.org/W2141920662","https://openalex.org/W2151794156","https://openalex.org/W2159998739","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2168531624","https://openalex.org/W2171475724","https://openalex.org/W2895878640"],"related_works":["https://openalex.org/W2991626973","https://openalex.org/W4387083702","https://openalex.org/W4318940746","https://openalex.org/W2767590279","https://openalex.org/W4297088614","https://openalex.org/W2213265806","https://openalex.org/W3179696020","https://openalex.org/W3090794301","https://openalex.org/W2995491352","https://openalex.org/W2079322808"],"abstract_inverted_index":{"In":[0],"this":[1],"article,":[2],"we":[3,94],"develop":[4],"an":[5],"algorithm,":[6],"called":[7],"extract":[8],"paths":[9,16],"for":[10,21],"genome":[11,22],"assembly":[12],"(EPGA),":[13],"which":[14],"extracts":[15],"from":[17],"De":[18],"Bruijn":[19],"graph":[20],"assembly.":[23],"EPGA":[24,68,83,99,109],"uses":[25,84],"a":[26],"new":[27],"score":[28],"function":[29],"to":[30,87],"evaluate":[31,88],"extension":[32,89],"candidates":[33],"based":[34],"on":[35],"the":[36,60,63,96],"distributions":[37],"of":[38,45,62,65,98],"reads":[39,46],"and":[40,54,100,114,118],"insert":[41,66],"size.":[42],"The":[43,104],"distribution":[44,64],"can":[47,69,110],"solve":[48,70],"problems":[49,71],"caused":[50],"by":[51,73],"sequencing":[52,81],"errors":[53],"short":[55],"repetitive":[56,76],"regions.":[57,77],"Through":[58],"assessing":[59],"variation":[61],"size,":[67],"introduced":[72],"some":[74],"complex":[75],"For":[78],"solving":[79],"uneven":[80],"depth,":[82],"relative":[85],"mapping":[86],"candidates.":[90],"On":[91],"real":[92],"datasets,":[93],"compare":[95],"performance":[97],"other":[101],"popular":[102],"assemblers.":[103],"experimental":[105],"results":[106],"demonstrate":[107],"that":[108],"effectively":[111],"obtain":[112],"longer":[113],"more":[115],"accurate":[116],"contigs":[117],"scaffolds.":[119]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}