{"id":"https://openalex.org/W2021688572","doi":"https://doi.org/10.1093/bioinformatics/btu750","title":"M-path: a compass for navigating potential metabolic pathways","display_name":"M-path: a compass for navigating potential metabolic pathways","publication_year":2014,"publication_date":"2014-11-13","ids":{"openalex":"https://openalex.org/W2021688572","doi":"https://doi.org/10.1093/bioinformatics/btu750","mag":"2021688572","pmid":"https://pubmed.ncbi.nlm.nih.gov/25398612"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/905/49011319/bioinformatics_31_6_905.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/905/49011319/bioinformatics_31_6_905.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037239790","display_name":"Michihiro Araki","orcid":"https://orcid.org/0000-0002-6686-4018"},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Michihiro Araki","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042765353","display_name":"Robert Sidney Cox","orcid":"https://orcid.org/0000-0002-2009-6236"},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Robert Sidney Cox","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018122577","display_name":"Hiroki Makiguchi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroki Makiguchi","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112136550","display_name":"Teppei Ogawa","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Teppei Ogawa","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005489201","display_name":"Takeshi Taniguchi","orcid":"https://orcid.org/0000-0001-7386-1117"},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takeshi Taniguchi","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033203450","display_name":"Kohei Miyaoku","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kohei Miyaoku","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091525968","display_name":"Masahiko Nakatsui","orcid":"https://orcid.org/0000-0001-6531-5220"},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahiko Nakatsui","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086637921","display_name":"Kiyotaka Y. Hara","orcid":"https://orcid.org/0000-0002-4477-6594"},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kiyotaka Y. Hara","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014256354","display_name":"Akihiko Kondo","orcid":"https://orcid.org/0000-0003-1527-5288"},"institutions":[{"id":"https://openalex.org/I4210099606","display_name":"Mitsubishi Chemical Group Science and Technology Research Center (Japan)","ror":"https://ror.org/011qgx996","country_code":"JP","type":"company","lineage":["https://openalex.org/I1306287861","https://openalex.org/I4210099606","https://openalex.org/I4210140025"]},{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Akihiko Kondo","raw_affiliation_strings":["1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Organization of Advanced Science and Technology, Kobe University, Kobe 657-8501, 2Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe 657-8501, 3Mitsui Knowledge Industry (MKI) Co., Osaka 530-0005, 4MCHC R&D Synergy Center, Inc., Yokohama 227-8502 and 5Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc., Yokohama 227-8502, Japan","institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5014256354","https://openalex.org/A5037239790"],"corresponding_institution_ids":["https://openalex.org/I4210099606","https://openalex.org/I65837984"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6752,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.83375923,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"31","issue":"6","first_page":"905","last_page":"911"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.8853999972343445,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.8853999972343445,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.019500000402331352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.008200000040233135,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compass","display_name":"Compass","score":0.8966246843338013},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.6627105474472046},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5657064914703369},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3572201728820801},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35185787081718445},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.217752605676651},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.170090913772583},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.12123832106590271},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09326931834220886}],"concepts":[{"id":"https://openalex.org/C2778361833","wikidata":"https://www.wikidata.org/wiki/Q34735","display_name":"Compass","level":2,"score":0.8966246843338013},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.6627105474472046},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5657064914703369},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3572201728820801},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35185787081718445},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.217752605676651},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.170090913772583},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.12123832106590271},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09326931834220886}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/905/49011319/bioinformatics_31_6_905.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25398612","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25398612","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/905/49011319/bioinformatics_31_6_905.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.4399999976158142,"display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G8992211153","display_name":"Informatics analysis on selectivity and diversity of enzymatic reaction","funder_award_id":"26430198","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1524559426","https://openalex.org/W1964232618","https://openalex.org/W1971080541","https://openalex.org/W1972863608","https://openalex.org/W1988487669","https://openalex.org/W1989488173","https://openalex.org/W1996629685","https://openalex.org/W1996830618","https://openalex.org/W1997045431","https://openalex.org/W2030555543","https://openalex.org/W2034993111","https://openalex.org/W2042067428","https://openalex.org/W2044172420","https://openalex.org/W2059128096","https://openalex.org/W2078355959","https://openalex.org/W2096525273","https://openalex.org/W2096729078","https://openalex.org/W2104619491","https://openalex.org/W2109449871","https://openalex.org/W2113531097","https://openalex.org/W2119866908","https://openalex.org/W2120550036","https://openalex.org/W2123060905","https://openalex.org/W2124019798","https://openalex.org/W2129860041","https://openalex.org/W2131504364","https://openalex.org/W2156409537","https://openalex.org/W2163480486","https://openalex.org/W2163898101","https://openalex.org/W2164538999","https://openalex.org/W2165612309","https://openalex.org/W2167539386","https://openalex.org/W2168504993","https://openalex.org/W2315495271","https://openalex.org/W2316047878","https://openalex.org/W4230784961","https://openalex.org/W4237629094","https://openalex.org/W6674416663"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2206872286","https://openalex.org/W2382913035","https://openalex.org/W2113447385","https://openalex.org/W2391335452","https://openalex.org/W2360876323","https://openalex.org/W2122695655","https://openalex.org/W2109954054","https://openalex.org/W2642723128"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"Construction":[2],"of":[3,10,20,60,94,139,153,160],"synthetic":[4,17,75,102,146],"metabolic":[5,18,48,76,103,131,147,167],"pathways":[6,19,77,132,148,168],"promises":[7],"sustainable":[8],"production":[9],"diverse":[11],"chemicals":[12],"and":[13,35,62,82,96,112,174,179,189],"materials.":[14],"To":[15],"design":[16],"high":[21],"value,":[22],"computational":[23,40,70],"methods":[24,41],"are":[25,181,195],"needed":[26],"to":[27,73,99,128,164],"expand":[28],"present":[29],"knowledge":[30],"by":[31],"mining":[32],"comprehensive":[33,151],"chemical":[34,61,95,140],"enzymatic":[36,63,80,97],"information":[37],"databases.":[38],"Several":[39],"have":[42],"been":[43],"already":[44],"reported":[45],"for":[46,149,169,183],"the":[47,58,109,137],"pathway":[49,123],"design,":[50],"but":[51],"until":[52],"now":[53],"computation":[54],"complexity":[55],"has":[56],"limited":[57],"diversity":[59],"data":[64,194],"used.":[65],"Results:":[66],"We":[67,142],"introduce":[68],"a":[69,150],"platform,":[71],"M-path,":[72],"explore":[74],"including":[78],"putative":[79],"reactions":[81],"compounds.":[83],"M-path":[84,105,161],"is":[85,125],"an":[86],"iterative":[87],"random":[88],"algorithm,":[89],"which":[90],"makes":[91],"efficient":[92],"use":[93],"databases":[98],"find":[100],"potential":[101,166],"pathways.":[104,120],"can":[106],"readily":[107],"control":[108],"search":[110],"space":[111],"perform":[113],"well":[114],"compared":[115],"with":[116,133],"exhaustively":[117],"enumerating":[118],"possible":[119],"A":[121],"web-based":[122],"viewer":[124,180],"also":[126],"developed":[127],"check":[129],"extensive":[130,145],"evaluation":[134],"scores":[135],"on":[136],"basis":[138],"similarities.":[141],"further":[143],"produce":[144],"set":[152],"alpha":[154],"amino":[155],"acids.":[156],"The":[157,176],"scalable":[158],"nature":[159],"enables":[162],"us":[163],"calculate":[165],"any":[170],"given":[171],"chemicals.":[172],"Availability":[173],"implementation:":[175],"web":[177],"tool":[178],"available":[182,196],"free":[184],"at":[185,197],"http://bp.scitec.kobe-u.ac.jp/m-path/aa/.":[186],"Contact:":[187],"araki@port.kobe-u.ac.jp":[188],"akondo@kobe-u.ac.jp":[190],"Supplementary":[191,193],"information:":[192],"Bioinformatics":[198],"online.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
