{"id":"https://openalex.org/W2158320325","doi":"https://doi.org/10.1093/bioinformatics/btu749","title":"M3D: a kernel-based test for spatially correlated changes in methylation profiles","display_name":"M3D: a kernel-based test for spatially correlated changes in methylation profiles","publication_year":2014,"publication_date":"2014-11-13","ids":{"openalex":"https://openalex.org/W2158320325","doi":"https://doi.org/10.1093/bioinformatics/btu749","mag":"2158320325","pmid":"https://pubmed.ncbi.nlm.nih.gov/25398611"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu749","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu749","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/809/49011736/bioinformatics_31_6_809.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/809/49011736/bioinformatics_31_6_809.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014039589","display_name":"Tom Mayo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134627","display_name":"Wellcome Centre for Cell Biology","ror":"https://ror.org/03xbccz06","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210134627","https://openalex.org/I87048295","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tom R. Mayo","raw_affiliation_strings":["1 IANC, School of Informatics, University of Edinburgh, Edinburgh EH8 9AB and 2Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IANC, School of Informatics, University of Edinburgh, Edinburgh EH8 9AB and 2Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK","institution_ids":["https://openalex.org/I4210134627","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060937554","display_name":"Gabriele Schweikert","orcid":"https://orcid.org/0000-0002-7813-7918"},"institutions":[{"id":"https://openalex.org/I4210134627","display_name":"Wellcome Centre for Cell Biology","ror":"https://ror.org/03xbccz06","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210134627","https://openalex.org/I87048295","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gabriele Schweikert","raw_affiliation_strings":["1 IANC, School of Informatics, University of Edinburgh, Edinburgh EH8 9AB and 2Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IANC, School of Informatics, University of Edinburgh, Edinburgh EH8 9AB and 2Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK","institution_ids":["https://openalex.org/I4210134627","https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017674487","display_name":"Guido Sanguinetti","orcid":"https://orcid.org/0000-0002-6663-8336"},"institutions":[{"id":"https://openalex.org/I4210134627","display_name":"Wellcome Centre for Cell Biology","ror":"https://ror.org/03xbccz06","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210134627","https://openalex.org/I87048295","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Guido Sanguinetti","raw_affiliation_strings":["1 IANC, School of Informatics, University of Edinburgh, Edinburgh EH8 9AB and 2Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IANC, School of Informatics, University of Edinburgh, Edinburgh EH8 9AB and 2Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK","institution_ids":["https://openalex.org/I4210134627","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017674487"],"corresponding_institution_ids":["https://openalex.org/I4210134627","https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":2893,"currency":"EUR","value_usd":3120},"fwci":1.6752,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.84125467,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"31","issue":"6","first_page":"809","last_page":"816"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.2280000001192093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.2280000001192093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.18979999423027039,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.09390000253915787,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.6214264631271362},{"id":"https://openalex.org/keywords/test","display_name":"Test (biology)","score":0.5120306611061096},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.507049560546875},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4458419680595398},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.32737088203430176},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.29409122467041016},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2770913541316986},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1971152424812317},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08765274286270142},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.06863856315612793}],"concepts":[{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.6214264631271362},{"id":"https://openalex.org/C2777267654","wikidata":"https://www.wikidata.org/wiki/Q3519023","display_name":"Test (biology)","level":2,"score":0.5120306611061096},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.507049560546875},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4458419680595398},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.32737088203430176},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.29409122467041016},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2770913541316986},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1971152424812317},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08765274286270142},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.06863856315612793},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btu749","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu749","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/809/49011736/bioinformatics_31_6_809.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25398611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25398611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire/9f27a856-8768-47e0-87c6-df13adbe0fa3","is_oa":true,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/9f27a856-8768-47e0-87c6-df13adbe0fa3","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mayo, T R, Schweikert, G & Sanguinetti, G 2015, 'M 3 D : A kernel-based test for spatially correlated changes in methylation profiles', Bioinformatics, vol. 31, no. 6, pp. 809-816. https://doi.org/10.1093/bioinformatics/btu749","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4380032","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4380032","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/60fcc305-513d-42b5-8731-32996c9318f8","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11820/60fcc305-513d-42b5-8731-32996c9318f8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mayo, T, Schweikert, G & Sanguinetti, G 2015, 'M3D : a kernel-based test for spatially correlated changes in methylation profiles', Bioinformatics, vol. 31, no. 6, pp. 809-816. https://doi.org/10.1093/bioinformatics/btu749","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/60fcc305-513d-42b5-8731-32996c9318f8","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/60fcc305-513d-42b5-8731-32996c9318f8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mayo, T, Schweikert, G & Sanguinetti, G 2015, 'M3D : a kernel-based test for spatially correlated changes in methylation profiles', Bioinformatics, vol. 31, no. 6, pp. 809-816. https://doi.org/10.1093/bioinformatics/btu749","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/60fcc305-513d-42b5-8731-32996c9318f8","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/portal/en/publications/m3d(60fcc305-513d-42b5-8731-32996c9318f8).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu749","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu749","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/809/49011736/bioinformatics_31_6_809.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1346256440","display_name":null,"funder_award_id":"EP/F500385/1 and BB/F529254/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G1521613574","display_name":null,"funder_award_id":"BB/F529254/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2939866019","display_name":null,"funder_award_id":"F500385/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5310261134","display_name":null,"funder_award_id":"EP/F500385/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8538723892","display_name":null,"funder_award_id":"EU FP7","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158320325.pdf","grobid_xml":"https://content.openalex.org/works/W2158320325.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1607966873","https://openalex.org/W1982881824","https://openalex.org/W1986849101","https://openalex.org/W1989573122","https://openalex.org/W2002812828","https://openalex.org/W2013250198","https://openalex.org/W2021621793","https://openalex.org/W2041191257","https://openalex.org/W2045316197","https://openalex.org/W2046159498","https://openalex.org/W2046387526","https://openalex.org/W2053309035","https://openalex.org/W2056044315","https://openalex.org/W2069796345","https://openalex.org/W2096330673","https://openalex.org/W2100305481","https://openalex.org/W2110065044","https://openalex.org/W2112655992","https://openalex.org/W2113588666","https://openalex.org/W2116211027","https://openalex.org/W2117675660","https://openalex.org/W2125865219","https://openalex.org/W2127192982","https://openalex.org/W2150936392","https://openalex.org/W2156124720","https://openalex.org/W2161207752","https://openalex.org/W2166244392","https://openalex.org/W2212660284","https://openalex.org/W2259938310","https://openalex.org/W4210767115","https://openalex.org/W6678814708","https://openalex.org/W6688325169"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"MOTIVATION:":[0],"DNA":[1,27],"methylation":[2,75,108],"is":[3,34],"an":[4,118],"intensely":[5],"studied":[6],"epigenetic":[7],"mark":[8],"implicated":[9],"in":[10,51,74,90,97,104],"many":[11],"biological":[12],"processes":[13],"of":[14,26,31,41,107],"direct":[15],"clinical":[16],"relevance.":[17],"Although":[18],"sequencing-based":[19],"technologies":[20],"are":[21],"increasingly":[22],"allowing":[23],"high-resolution":[24],"measurements":[25],"methylation,":[28],"statistical":[29,39,58],"modelling":[30],"such":[32,77],"data":[33],"still":[35],"challenging.":[36],"In":[37],"particular,":[38],"identification":[40],"differentially":[42],"methylated":[43],"regions":[44],"across":[45,80],"different":[46],"conditions":[47],"poses":[48],"unresolved":[49],"challenges":[50],"accounting":[52],"for":[53,88],"spatial":[54],"correlations":[55],"within":[56],"the":[57,105],"testing":[59],"procedure.":[60],"RESULTS:":[61],"We":[62],"propose":[63],"a":[64,98,101],"non-parametric,":[65],"kernel-based":[66],"method,":[67],"M(3)D,":[68],"to":[69,122,132],"detect":[70],"higher":[71],"order":[72],"changes":[73],"profiles,":[76],"as":[78,125,127],"shape,":[79],"pre-defined":[81],"regions.":[82],"The":[83],"test":[84],"statistic":[85],"explicitly":[86],"accounts":[87],"differences":[89],"coverage":[91,133],"levels":[92],"between":[93],"samples,":[94],"thus":[95],"handling":[96],"principled":[99],"way":[100],"major":[102],"confounder":[103],"analysis":[106],"data.":[109],"Empirical":[110],"tests":[111],"on":[112],"real":[113],"and":[114,134],"simulated":[115],"datasets":[116],"show":[117],"increased":[119],"power":[120],"compared":[121],"established":[123],"methods,":[124],"well":[126],"considerable":[128],"robustness":[129],"with":[130],"respect":[131],"replication":[135],"levels.":[136]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2016-06-24T00:00:00"}
