{"id":"https://openalex.org/W2124112771","doi":"https://doi.org/10.1093/bioinformatics/btu747","title":"Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data","display_name":"Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data","publication_year":2014,"publication_date":"2014-11-12","ids":{"openalex":"https://openalex.org/W2124112771","doi":"https://doi.org/10.1093/bioinformatics/btu747","mag":"2124112771","pmid":"https://pubmed.ncbi.nlm.nih.gov/25391400"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu747","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu747","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/960/17127085/btu747.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/960/17127085/btu747.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101981508","display_name":"Wenyuan Li","orcid":"https://orcid.org/0000-0002-8831-9889"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenyuan Li","raw_affiliation_strings":["Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000091844","display_name":"Ke Gong","orcid":"https://orcid.org/0000-0003-0337-297X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ke Gong","raw_affiliation_strings":["Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006560994","display_name":"Qingjiao Li","orcid":"https://orcid.org/0000-0002-7816-123X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qingjiao Li","raw_affiliation_strings":["Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045820772","display_name":"Frank Alber","orcid":"https://orcid.org/0000-0003-1981-8390"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frank Alber","raw_affiliation_strings":["Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050577808","display_name":"Xianghong Jasmine Zhou","orcid":"https://orcid.org/0000-0002-4522-7490"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xianghong Jasmine Zhou","raw_affiliation_strings":["Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5050577808"],"corresponding_institution_ids":["https://openalex.org/I1174212"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.8632,"has_fulltext":true,"cited_by_count":80,"citation_normalized_percentile":{"value":0.91583288,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"31","issue":"6","first_page":"960","last_page":"962"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8121466040611267},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6787972450256348},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6668201684951782},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6056699156761169},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5732184052467346},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48554059863090515},{"id":"https://openalex.org/keywords/auxiliary-memory","display_name":"Auxiliary memory","score":0.4668973386287689},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.4524378776550293},{"id":"https://openalex.org/keywords/shared-memory","display_name":"Shared memory","score":0.4313778579235077},{"id":"https://openalex.org/keywords/memory-hierarchy","display_name":"Memory hierarchy","score":0.42840784788131714},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.3574310541152954},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.24093657732009888},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15360978245735168},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1463978886604309}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8121466040611267},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6787972450256348},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6668201684951782},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6056699156761169},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5732184052467346},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48554059863090515},{"id":"https://openalex.org/C82687282","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Auxiliary memory","level":2,"score":0.4668973386287689},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.4524378776550293},{"id":"https://openalex.org/C133875982","wikidata":"https://www.wikidata.org/wiki/Q764810","display_name":"Shared memory","level":2,"score":0.4313778579235077},{"id":"https://openalex.org/C2778100165","wikidata":"https://www.wikidata.org/wiki/Q1589327","display_name":"Memory hierarchy","level":3,"score":0.42840784788131714},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.3574310541152954},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.24093657732009888},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15360978245735168},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1463978886604309},{"id":"https://openalex.org/C115537543","wikidata":"https://www.wikidata.org/wiki/Q165596","display_name":"Cache","level":2,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015698","descriptor_name":"Genomic Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015698","descriptor_name":"Genomic Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015698","descriptor_name":"Genomic Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu747","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu747","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/960/17127085/btu747.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25391400","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25391400","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4380031","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4380031","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu747","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu747","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/6/960/17127085/btu747.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2215457112","display_name":"CAREER:   Exploring the 3D structure organization of genomes","funder_award_id":"1150287","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5530303202","display_name":null,"funder_award_id":"U01 HL108634","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7127494253","display_name":"MAPGen Knowledge Base (MAPGenKB) and Coordination Center","funder_award_id":"7u01hl108634-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306148","display_name":"Pew Charitable Trusts","ror":"https://ror.org/02xhk2825"},{"id":"https://openalex.org/F4320306253","display_name":"Arnold and Mabel Beckman Foundation","ror":"https://ror.org/05avmtm72"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124112771.pdf","grobid_xml":"https://content.openalex.org/works/W2124112771.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1486210902","https://openalex.org/W1969947785","https://openalex.org/W2001576815","https://openalex.org/W2009653511","https://openalex.org/W2065006553","https://openalex.org/W2070021921","https://openalex.org/W2073504534","https://openalex.org/W2079639858","https://openalex.org/W2090037139","https://openalex.org/W2097798909","https://openalex.org/W2101546138","https://openalex.org/W2102368172","https://openalex.org/W2105778988","https://openalex.org/W2145619687","https://openalex.org/W2165780114","https://openalex.org/W2170696599","https://openalex.org/W3037385489","https://openalex.org/W4285719527","https://openalex.org/W6628998228"],"related_works":["https://openalex.org/W3179328532","https://openalex.org/W2966569152","https://openalex.org/W2594155508","https://openalex.org/W2545380179","https://openalex.org/W2811273125","https://openalex.org/W3083624021","https://openalex.org/W2081131254","https://openalex.org/W2159725480","https://openalex.org/W266521192","https://openalex.org/W2038204502"],"abstract_inverted_index":{"UNLABELLED:":[0],"Genome-wide":[1],"proximity":[2],"ligation":[3],"assays,":[4],"e.g.":[5],"Hi-C":[6,53,94,106,121],"and":[7,75,88,176,198],"its":[8,78],"variant":[9],"TCC,":[10],"have":[11],"recently":[12],"become":[13],"important":[14],"tools":[15],"to":[16,47],"study":[17],"spatial":[18],"genome":[19],"organization.":[20],"Removing":[21],"biases":[22],"from":[23],"chromatin":[24,61],"contact":[25],"matrices":[26,59],"generated":[27],"by":[28],"such":[29],"techniques":[30],"is":[31,82,117,171,187,210],"a":[32,68],"critical":[33],"preprocessing":[34],"step":[35],"of":[36,42,51,60,77,93,104,119,123],"subsequent":[37],"analyses.":[38],"The":[39,168,208],"continuing":[40],"decline":[41],"sequencing":[43],"costs":[44],"has":[45],"led":[46],"an":[48,83,99],"ever-improving":[49],"resolution":[50],"the":[52,72,105,184,193],"data,":[54],"resulting":[55],"in":[56,126,173,189],"very":[57,141,155],"large":[58],"contacts.":[62],"Such":[63],"large-size":[64],"matrices,":[65],"however,":[66],"pose":[67],"great":[69],"challenge":[70],"on":[71,136,157,181],"memory":[73,130],"usage":[74],"speed":[76],"normalization.":[79],"Therefore,":[80],"there":[81],"urgent":[84],"need":[85],"for":[86,91,203],"fast":[87,149,156],"memory-efficient":[89],"methods":[90],"normalization":[92,108],"data.":[95],"We":[96],"developed":[97],"Hi-Corrector,":[98],"easy-to-use,":[100],"open":[101],"source":[102],"implementation":[103],"data":[107,122],"algorithm.":[109],"Its":[110],"salient":[111],"features":[112],"are":[113],"(i)":[114],"scalability-the":[115],"software":[116],"capable":[118],"normalizing":[120],"any":[124,137,182],"size":[125],"reasonable":[127],"times;":[128],"(ii)":[129],"efficiency-the":[131],"sequential":[132,169],"version":[133,152,170,186],"can":[134,153,177],"run":[135,154],"single":[138],"computer":[139],"with":[140,161,192],"limited":[142,162],"memory,":[143],"no":[144],"matter":[145],"how":[146],"little;":[147],"(iii)":[148],"speed-the":[150],"parallel":[151,185,200],"multiple":[158],"computing":[159],"nodes":[160],"local":[163],"memory.":[164],"AVAILABILITY":[165],"AND":[166],"IMPLEMENTATION:":[167],"implemented":[172,188],"ANSI":[174,190],"C":[175,191],"be":[178],"easily":[179],"compiled":[180],"system;":[183],"MPI":[194],"library":[195],"(a":[196],"standardized":[197],"portable":[199],"environment":[201],"designed":[202],"solving":[204],"large-scale":[205],"scientific":[206],"problems).":[207],"package":[209],"freely":[211],"available":[212],"at":[213],"http://zhoulab.usc.edu/Hi-Corrector/.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
