{"id":"https://openalex.org/W2100561213","doi":"https://doi.org/10.1093/bioinformatics/btu745","title":"<i>Taxator-tk</i>: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods","display_name":"<i>Taxator-tk</i>: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods","publication_year":2014,"publication_date":"2014-11-10","ids":{"openalex":"https://openalex.org/W2100561213","doi":"https://doi.org/10.1093/bioinformatics/btu745","mag":"2100561213","pmid":"https://pubmed.ncbi.nlm.nih.gov/25388150"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu745","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu745","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btu745","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089233824","display_name":"Johannes Dr\u00f6ge","orcid":"https://orcid.org/0000-0002-6752-2204"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J. Dr\u00f6ge","raw_affiliation_strings":["1 Department for Algorithmic Bioinformatics, Heinrich Heine University, Universit\u00e4tsstra\u00dfe 1, 40225 D\u00fcsseldorf, Germany, 2Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, University Campus E1 4, 66123 Saarbr\u00fccken, Germany and 3Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstra\u00dfe 7, 38124 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department for Algorithmic Bioinformatics, Heinrich Heine University, Universit\u00e4tsstra\u00dfe 1, 40225 D\u00fcsseldorf, Germany, 2Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, University Campus E1 4, 66123 Saarbr\u00fccken, Germany and 3Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstra\u00dfe 7, 38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I4210124929","https://openalex.org/I44260953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040775890","display_name":"Ivan Gregor","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"I. Gregor","raw_affiliation_strings":["1 Department for Algorithmic Bioinformatics, Heinrich Heine University, Universit\u00e4tsstra\u00dfe 1, 40225 D\u00fcsseldorf, Germany, 2Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, University Campus E1 4, 66123 Saarbr\u00fccken, Germany and 3Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstra\u00dfe 7, 38124 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department for Algorithmic Bioinformatics, Heinrich Heine University, Universit\u00e4tsstra\u00dfe 1, 40225 D\u00fcsseldorf, Germany, 2Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, University Campus E1 4, 66123 Saarbr\u00fccken, Germany and 3Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstra\u00dfe 7, 38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I4210124929","https://openalex.org/I44260953"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081103408","display_name":"Alice C. McHardy","orcid":"https://orcid.org/0000-0003-2370-3430"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"A. C. McHardy","raw_affiliation_strings":["1 Department for Algorithmic Bioinformatics, Heinrich Heine University, Universit\u00e4tsstra\u00dfe 1, 40225 D\u00fcsseldorf, Germany, 2Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, University Campus E1 4, 66123 Saarbr\u00fccken, Germany and 3Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstra\u00dfe 7, 38124 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department for Algorithmic Bioinformatics, Heinrich Heine University, Universit\u00e4tsstra\u00dfe 1, 40225 D\u00fcsseldorf, Germany, 2Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, University Campus E1 4, 66123 Saarbr\u00fccken, Germany and 3Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstra\u00dfe 7, 38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I4210124929","https://openalex.org/I44260953"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081103408"],"corresponding_institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I4210124929","https://openalex.org/I44260953"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.1094,"has_fulltext":true,"cited_by_count":161,"citation_normalized_percentile":{"value":0.97393557,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"31","issue":"6","first_page":"817","last_page":"824"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.4275999963283539,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.4275999963283539,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3172000050544739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.17000000178813934,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8639876842498779},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.844127893447876},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6219083070755005},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5908379554748535},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5406553149223328},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44845080375671387},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.4107643663883209},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31035852432250977},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.279562771320343},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25040513277053833}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8639876842498779},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.844127893447876},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6219083070755005},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5908379554748535},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5406553149223328},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44845080375671387},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.4107643663883209},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31035852432250977},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.279562771320343},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25040513277053833}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btu745","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu745","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25388150","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25388150","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.helmholtz-hzi.de:10033/337182","is_oa":true,"landing_page_url":"http://hdl.handle.net/10033/337182","pdf_url":"https://repository.helmholtz-hzi.de/bitstream/10033/337182/1/Dr%c3%b6ge%20et%20al_final.pdf","source":{"id":"https://openalex.org/S4377196474","display_name":"HZI (Helmholtz Centre for Infection Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210124929","host_organization_name":"Helmholtz Centre for Infection Research","host_organization_lineage":["https://openalex.org/I4210124929"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4380030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4380030","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu745","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu745","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W176296285","https://openalex.org/W1497889124","https://openalex.org/W1499660081","https://openalex.org/W1816304031","https://openalex.org/W1933529014","https://openalex.org/W1969346416","https://openalex.org/W1979006961","https://openalex.org/W1992715872","https://openalex.org/W1997147083","https://openalex.org/W1998907083","https://openalex.org/W2007135806","https://openalex.org/W2035396875","https://openalex.org/W2040412593","https://openalex.org/W2040486579","https://openalex.org/W2044687704","https://openalex.org/W2045382640","https://openalex.org/W2045449780","https://openalex.org/W2045524298","https://openalex.org/W2047560619","https://openalex.org/W2053564429","https://openalex.org/W2055107045","https://openalex.org/W2055503200","https://openalex.org/W2068187483","https://openalex.org/W2083395367","https://openalex.org/W2084599485","https://openalex.org/W2089859322","https://openalex.org/W2096525273","https://openalex.org/W2097493826","https://openalex.org/W2100360909","https://openalex.org/W2101077405","https://openalex.org/W2103901746","https://openalex.org/W2103962160","https://openalex.org/W2106309093","https://openalex.org/W2108491286","https://openalex.org/W2109461360","https://openalex.org/W2115026474","https://openalex.org/W2123837003","https://openalex.org/W2124597406","https://openalex.org/W2124927293","https://openalex.org/W2125230147","https://openalex.org/W2129933858","https://openalex.org/W2131026689","https://openalex.org/W2132415967","https://openalex.org/W2137015563","https://openalex.org/W2142678478","https://openalex.org/W2143842034","https://openalex.org/W2148181108","https://openalex.org/W2150337627","https://openalex.org/W2150484441","https://openalex.org/W2151372451","https://openalex.org/W2152469342","https://openalex.org/W2154969423","https://openalex.org/W2157509893","https://openalex.org/W2159954944","https://openalex.org/W2169417293","https://openalex.org/W2179447714","https://openalex.org/W2263997305","https://openalex.org/W2275584637","https://openalex.org/W2346702698","https://openalex.org/W2742667902","https://openalex.org/W2793466413","https://openalex.org/W2952946307","https://openalex.org/W3021879817","https://openalex.org/W3121891997","https://openalex.org/W3122636373","https://openalex.org/W3123937311","https://openalex.org/W3124560671","https://openalex.org/W3124577823","https://openalex.org/W3124978224","https://openalex.org/W4211049762","https://openalex.org/W4250297812","https://openalex.org/W6764980412"],"related_works":["https://openalex.org/W3043668926","https://openalex.org/W3036436206","https://openalex.org/W4389452281","https://openalex.org/W4238948313","https://openalex.org/W3003110834","https://openalex.org/W3111832393","https://openalex.org/W3000916974","https://openalex.org/W3183189600","https://openalex.org/W3134948850","https://openalex.org/W2987572536"],"abstract_inverted_index":{"MOTIVATION:":[0],"Metagenomics":[1],"characterizes":[2],"microbial":[3,131,196],"communities":[4,132],"by":[5,52,79,148],"random":[6],"shotgun":[7],"sequencing":[8,54],"of":[9,16,83,105,123,162,178,181],"DNA":[10],"isolated":[11],"directly":[12],"from":[13,86,133],"an":[14,67,170],"environment":[15],"interest.":[17],"An":[18],"essential":[19],"step":[20],"in":[21,93,154],"computational":[22],"metagenome":[23,134],"analysis":[24],"is":[25,126],"taxonomic":[26,38,76,95,121],"sequence":[27,41,77,87,182],"assignment,":[28],"which":[29,74],"allows":[30,175],"identifying":[31],"the":[32,44,48,70,120,176,199],"sequenced":[33],"community":[34,143],"members":[35,144],"and":[36,69,100,108,141,195],"reconstructing":[37],"bins":[39],"with":[40,60,191],"data":[42,183],"for":[43,102,109,114,129],"individual":[45],"taxa.":[46,167],"For":[47],"massive":[49],"datasets":[50],"generated":[51],"next-generation":[53],"technologies,":[55],"this":[56],"cannot":[57],"be":[58],"performed":[59],"de-novo":[61],"phylogenetic":[62],"inference":[63],"methods.":[64],"We":[65],"describe":[66],"algorithm":[68],"accompanying":[71],"software,":[72],"taxator-tk,":[73],"performs":[75],"assignment":[78,96,177],"fast":[80],"approximate":[81],"determination":[82],"evolutionary":[84,106],"neighbors":[85],"similarities.":[88],"RESULTS:":[89],"Taxator-tk":[90,168],"was":[91],"precise":[92],"its":[94],"across":[97,165],"all":[98],"ranks":[99],"taxa":[101],"a":[103,187],"range":[104],"distances":[107],"short":[110],"as":[111,113,153,198],"well":[112,127],"long":[115],"sequences.":[116],"In":[117],"addition":[118],"to":[119],"binning":[122],"metagenomes,":[124],"it":[125,137],"suited":[128],"profiling":[130],"samples":[135],"because":[136],"identifies":[138],"bacterial,":[139],"archaeal":[140],"eukaryotic":[142],"without":[145],"being":[146],"affected":[147],"varying":[149],"primer":[150],"binding":[151],"strengths,":[152],"marker":[155,163],"gene":[156],"amplification,":[157],"or":[158],"copy":[159],"number":[160],"variations":[161],"genes":[164],"different":[166],"has":[169],"efficient,":[171],"parallelized":[172],"implementation":[173],"that":[174],"6":[179],"Gb":[180],"per":[184],"day":[185],"on":[186],"standard":[188],"multiprocessor":[189],"system":[190],"10":[192],"CPU":[193],"cores":[194],"RefSeq":[197],"genomic":[200],"reference":[201],"data.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":26},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2016-06-24T00:00:00"}
