{"id":"https://openalex.org/W2101251190","doi":"https://doi.org/10.1093/bioinformatics/btu708","title":"A novel representation of genomic sequences for taxonomic clustering and visualization by means of self-organizing maps","display_name":"A novel representation of genomic sequences for taxonomic clustering and visualization by means of self-organizing maps","publication_year":2014,"publication_date":"2014-10-24","ids":{"openalex":"https://openalex.org/W2101251190","doi":"https://doi.org/10.1093/bioinformatics/btu708","mag":"2101251190","pmid":"https://pubmed.ncbi.nlm.nih.gov/25344495"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu708","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu708","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/736/17124223/btu708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/736/17124223/btu708.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070568795","display_name":"Soledad Delgado","orcid":"https://orcid.org/0000-0003-4868-3712"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210129022","display_name":"Centro de Astrobiolog\u00eda","ror":"https://ror.org/038szmr31","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210117279","https://openalex.org/I4210129022"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Soledad Delgado","raw_affiliation_strings":["1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210115082","https://openalex.org/I4210129022","https://openalex.org/I4210132431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049380055","display_name":"Federico Mor\u00e1n","orcid":"https://orcid.org/0000-0003-3992-8829"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210129022","display_name":"Centro de Astrobiolog\u00eda","ror":"https://ror.org/038szmr31","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210117279","https://openalex.org/I4210129022"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Federico Mor\u00e1n","raw_affiliation_strings":["1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210115082","https://openalex.org/I4210129022","https://openalex.org/I4210132431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067599928","display_name":"Antonio M. Mora","orcid":"https://orcid.org/0000-0003-1603-9105"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210129022","display_name":"Centro de Astrobiolog\u00eda","ror":"https://ror.org/038szmr31","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210117279","https://openalex.org/I4210129022"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Mora","raw_affiliation_strings":["1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210115082","https://openalex.org/I4210129022","https://openalex.org/I4210132431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063930069","display_name":"J. J. Merelo","orcid":"https://orcid.org/0000-0002-1385-9741"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210129022","display_name":"Centro de Astrobiolog\u00eda","ror":"https://ror.org/038szmr31","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210117279","https://openalex.org/I4210129022"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan Juli\u00e1n Merelo","raw_affiliation_strings":["1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210115082","https://openalex.org/I4210129022","https://openalex.org/I4210132431"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043124468","display_name":"Carlos Briones","orcid":"https://orcid.org/0000-0003-2213-8353"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210129022","display_name":"Centro de Astrobiolog\u00eda","ror":"https://ror.org/038szmr31","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210117279","https://openalex.org/I4210129022"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Briones","raw_affiliation_strings":["1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Information Structure and Organization, Universidad Polit\u00e9cnica (UPM), Madrid 28031, 2Department of Biochemistry and Molecular Biology I, Universidad Complutense (UCM), Madrid 28040, 3Department of Computer Architecture and Computer Technology, Universidad de Granada (UGR), Granada 18071, Spain, 4CITIC, Campanillas, Malaga 29590, Spain, 5Department of Molecular Evolution, Centro de Astrobiolog\u00eda (CSIC-INTA), Torrej\u00f3n de Ardoz, Madrid 28850 and 6Centro de Investigaci\u00f3n Biom\u00e9dica en Red de enfermedades hep\u00e1ticas y digestivas (CIBERehd), Barcelona 08036, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210115082","https://openalex.org/I4210129022","https://openalex.org/I4210132431"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5070568795"],"corresponding_institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210115082","https://openalex.org/I4210129022","https://openalex.org/I4210132431"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6499,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.67817377,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"31","issue":"5","first_page":"736","last_page":"744"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.3021000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.3021000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.163100004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.08030000329017639,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7113008499145508},{"id":"https://openalex.org/keywords/self-organizing-map","display_name":"Self-organizing map","score":0.5968398451805115},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5202378034591675},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46617937088012695},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.46300366520881653},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.4428150951862335},{"id":"https://openalex.org/keywords/euclidean-distance","display_name":"Euclidean distance","score":0.43978258967399597},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.43045198917388916},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4129161834716797},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.41245898604393005},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3720599412918091},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3329232931137085},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30431902408599854},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19502541422843933},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18069100379943848},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.13949090242385864}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7113008499145508},{"id":"https://openalex.org/C111168008","wikidata":"https://www.wikidata.org/wiki/Q1136838","display_name":"Self-organizing map","level":3,"score":0.5968398451805115},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5202378034591675},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46617937088012695},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.46300366520881653},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.4428150951862335},{"id":"https://openalex.org/C120174047","wikidata":"https://www.wikidata.org/wiki/Q847073","display_name":"Euclidean distance","level":2,"score":0.43978258967399597},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.43045198917388916},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4129161834716797},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.41245898604393005},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3720599412918091},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3329232931137085},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30431902408599854},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19502541422843933},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18069100379943848},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.13949090242385864},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054302","descriptor_name":"pol Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054302","descriptor_name":"pol Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054302","descriptor_name":"pol Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu708","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu708","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/736/17124223/btu708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25344495","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25344495","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu708","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu708","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/736/17124223/btu708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W16352594","https://openalex.org/W101536592","https://openalex.org/W133267998","https://openalex.org/W628659596","https://openalex.org/W1524461994","https://openalex.org/W1552762231","https://openalex.org/W1963758584","https://openalex.org/W1999875603","https://openalex.org/W2010150441","https://openalex.org/W2015292449","https://openalex.org/W2026565396","https://openalex.org/W2027832294","https://openalex.org/W2034728773","https://openalex.org/W2065461553","https://openalex.org/W2066512697","https://openalex.org/W2067630581","https://openalex.org/W2073918065","https://openalex.org/W2093901628","https://openalex.org/W2095150428","https://openalex.org/W2098386120","https://openalex.org/W2110802877","https://openalex.org/W2126222178","https://openalex.org/W2153233077","https://openalex.org/W2161448051","https://openalex.org/W2163888482","https://openalex.org/W3036192984","https://openalex.org/W4245176872","https://openalex.org/W6600721654","https://openalex.org/W6631279558","https://openalex.org/W6632857427","https://openalex.org/W6684168891"],"related_works":["https://openalex.org/W2034551444","https://openalex.org/W2023416609","https://openalex.org/W1844640764","https://openalex.org/W2087388313","https://openalex.org/W2391956478","https://openalex.org/W2746882944","https://openalex.org/W4290667473","https://openalex.org/W1525517788","https://openalex.org/W3119443523","https://openalex.org/W2353952613"],"abstract_inverted_index":{"MOTIVATION:":[0],"Self-organizing":[1],"maps":[2],"(SOMs)":[3],"are":[4,44,188],"readily":[5],"available":[6],"bioinformatics":[7],"methods":[8,43],"for":[9,34],"clustering":[10,159],"and":[11,48,62,92,122,144,195],"visualizing":[12],"high-dimensional":[13],"data,":[14,40],"provided":[15],"that":[16,46,149],"such":[17],"biological":[18],"information":[19],"is":[20,160],"previously":[21],"transformed":[22],"to":[23,100,116,141,167],"fixed-size,":[24],"metric-based":[25],"vectors.":[26],"To":[27],"increase":[28],"the":[29,35,88,117,126,131,150,155,161,168,176,186],"usefulness":[30],"of":[31,37,104,108,120,125,130,134,157,163,170,175,183,200],"SOM-based":[32],"approaches":[33],"analysis":[36],"genomic":[38],"sequence":[39,66,158],"novel":[41],"representation":[42],"required":[45],"automatically":[47],"objectively":[49],"transform":[50],"aligned":[51],"nucleotide":[52,60],"sequences":[53,107,124],"into":[54],"numeric":[55],"vectors,":[56],"dealing":[57],"with":[58,191],"both":[59],"ambiguity":[61],"gaps":[63],"derived":[64],"from":[65,113],"alignment.":[67],"RESULTS:":[68],"Six":[69],"different":[70,102,142,181],"codification":[71,177,202],"variants":[72,178],"based":[73],"on":[74],"Euclidean":[75],"space,":[76],"just":[77],"like":[78],"SOM":[79,86,91],"processing,":[80],"have":[81,97],"been":[82,98],"tested":[83],"using":[84],"two":[85,101],"models:":[87],"classical":[89],"Kohonen's":[90],"growing":[93],"cell":[94],"structures.":[95],"They":[96],"applied":[99],"sets":[103],"sequences:":[105],"32":[106],"small":[109],"sub-unit":[110],"ribosomal":[111],"RNA":[112],"organisms":[114],"belonging":[115,140],"three":[118],"domains":[119],"life,":[121],"44":[123],"reverse":[127],"transcriptase":[128],"region":[129],"pol":[132],"gene":[133],"human":[135],"immunodeficiency":[136],"virus":[137],"type":[138],"1":[139],"groups":[143],"sub-types.":[145],"Our":[146],"results":[147,187],"show":[148],"most":[151],"important":[152],"factor":[153],"affecting":[154],"accuracy":[156],"assignment":[162],"an":[164],"extra":[165],"weight":[166],"presence":[169],"alignment-derived":[171],"gaps.":[172],"Although":[173],"each":[174],"shows":[179],"a":[180,197],"level":[182],"taxonomic":[184],"consistency,":[185],"in":[189],"agreement":[190],"sequence-based":[192],"phylogenetic":[193],"reconstructions":[194],"anticipate":[196],"broad":[198],"applicability":[199],"this":[201],"method.":[203]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
