{"id":"https://openalex.org/W2108542744","doi":"https://doi.org/10.1093/bioinformatics/btu707","title":"Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization","display_name":"Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization","publication_year":2014,"publication_date":"2014-10-25","ids":{"openalex":"https://openalex.org/W2108542744","doi":"https://doi.org/10.1093/bioinformatics/btu707","mag":"2108542744","pmid":"https://pubmed.ncbi.nlm.nih.gov/25344497"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu707","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu707","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038027438","display_name":"Fritz Lekschas","orcid":"https://orcid.org/0000-0001-8432-4835"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Fritz Lekschas","raw_affiliation_strings":["1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011842230","display_name":"Harald Stachelscheid","orcid":"https://orcid.org/0000-0002-9283-4605"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Harald Stachelscheid","raw_affiliation_strings":["1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085394780","display_name":"Stefanie Seltmann","orcid":"https://orcid.org/0000-0002-8411-3226"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Stefanie Seltmann","raw_affiliation_strings":["1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I7877124"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070999479","display_name":"Armin Kurtz","orcid":"https://orcid.org/0000-0003-3301-6546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Andreas Kurtz","raw_affiliation_strings":["1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Berlin-Brandenburg Center for Regenerative Therapies, Charit\u00e9\u2013Universit\u00e4tsmedizin Berlin, 13353 Berlin, Germany and 2Seoul National University, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I7877124"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.13,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.51685524,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"31","issue":"5","first_page":"794","last_page":"796"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.3407000005245209,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.3407000005245209,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.13670000433921814,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11984","display_name":"Anatomy and Medical Technology","score":0.07270000129938126,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8055820465087891},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.7969717979431152},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6215541362762451},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4866705536842346},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.4785355031490326},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4568231701850891},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4516040086746216},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39862385392189026},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21948760747909546},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.17340749502182007},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1565714180469513}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8055820465087891},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.7969717979431152},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6215541362762451},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4866705536842346},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.4785355031490326},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4568231701850891},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4516040086746216},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39862385392189026},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21948760747909546},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.17340749502182007},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1565714180469513},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu707","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu707","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25344497","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25344497","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:s-space.snu.ac.kr:10371/192300","is_oa":false,"landing_page_url":"https://hdl.handle.net/10371/192300","pdf_url":null,"source":{"id":"https://openalex.org/S4306401345","display_name":"Seoul National University Open Repository (Seoul National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139264467","host_organization_name":"Seoul National University","host_organization_lineage":["https://openalex.org/I139264467"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320338236","display_name":"Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1966116114","https://openalex.org/W1980354067","https://openalex.org/W2005097381","https://openalex.org/W2021880506","https://openalex.org/W2080008467","https://openalex.org/W2088367108","https://openalex.org/W2094953050","https://openalex.org/W2097065948","https://openalex.org/W2103260426","https://openalex.org/W2107564978","https://openalex.org/W2108234281","https://openalex.org/W2118258530","https://openalex.org/W2132352688","https://openalex.org/W2134526812","https://openalex.org/W2170551349","https://openalex.org/W4210767115"],"related_works":["https://openalex.org/W24843447","https://openalex.org/W2461078469","https://openalex.org/W94193318","https://openalex.org/W123790205","https://openalex.org/W2085515337","https://openalex.org/W3087706721","https://openalex.org/W2073808674","https://openalex.org/W3102852402","https://openalex.org/W4287664162","https://openalex.org/W4385695489"],"abstract_inverted_index":{"UNLABELLED:":[0],"Advancing":[1],"technologies":[2],"generate":[3],"large":[4],"amounts":[5],"of":[6,44,60,88],"molecular":[7],"and":[8,14,21,26,54,71],"phenotypic":[9],"data":[10,73],"on":[11,82,114],"cells,":[12],"tissues":[13],"organisms,":[15],"leading":[16],"to":[17,50,68,75],"an":[18,45],"ever-growing":[19],"detail":[20],"complexity":[22],"while":[23,80],"information":[24],"retrieval":[25],"analysis":[27],"becomes":[28],"increasingly":[29],"time-consuming.":[30],"The":[31,94,109],"Semantic":[32,95],"Body":[33,96],"Browser":[34,97],"is":[35,66,98,104,112],"a":[36,99],"web":[37,101],"application":[38,102],"for":[39],"intuitively":[40],"exploring":[41],"the":[42,48,51,76,83],"body":[43,78],"organism":[46],"from":[47],"organ":[49],"subcellular":[52],"level":[53],"visualising":[55],"expression":[56],"profiles":[57],"by":[58],"means":[59],"semantically":[61],"annotated":[62],"anatomical":[63],"illustrations.":[64],"It":[65],"used":[67],"comprehend":[69],"biological":[70],"medical":[72],"related":[74],"different":[77],"structures":[79],"relying":[81],"strong":[84],"pattern":[85],"recognition":[86],"capabilities":[87],"human":[89],"users.":[90],"AVAILABILITY":[91],"AND":[92],"IMPLEMENTATION:":[93],"JavaScript":[100],"that":[103],"freely":[105],"available":[106],"at":[107],"http://sbb.cellfinder.org.":[108],"source":[110],"code":[111],"provided":[113],"https://github.com/flekschas/sbb.":[115]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}