{"id":"https://openalex.org/W2163104142","doi":"https://doi.org/10.1093/bioinformatics/btu704","title":"minimac2: faster genotype imputation","display_name":"minimac2: faster genotype imputation","publication_year":2014,"publication_date":"2014-10-22","ids":{"openalex":"https://openalex.org/W2163104142","doi":"https://doi.org/10.1093/bioinformatics/btu704","mag":"2163104142","pmid":"https://pubmed.ncbi.nlm.nih.gov/25338720"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/782/13201353/btu704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/782/13201353/btu704.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034697802","display_name":"Christian Fuchsberger","orcid":"https://orcid.org/0000-0002-5918-8947"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210097491","display_name":"23andMe (United States)","ror":"https://ror.org/00q62jx03","country_code":"US","type":"company","lineage":["https://openalex.org/I4210097491"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christian Fuchsberger","raw_affiliation_strings":["1 \u00a01Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA and 223andMe, Inc., Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA and 223andMe, Inc., Mountain View, CA, USA","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210097491"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078559681","display_name":"Gon\u00e7alo R. Abecasis","orcid":"https://orcid.org/0000-0003-1509-1825"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210097491","display_name":"23andMe (United States)","ror":"https://ror.org/00q62jx03","country_code":"US","type":"company","lineage":["https://openalex.org/I4210097491"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gon\u00e7alo R. Abecasis","raw_affiliation_strings":["1 \u00a01Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA and 223andMe, Inc., Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA and 223andMe, Inc., Mountain View, CA, USA","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210097491"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056201449","display_name":"David A. Hinds","orcid":"https://orcid.org/0000-0002-4911-803X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210097491","display_name":"23andMe (United States)","ror":"https://ror.org/00q62jx03","country_code":"US","type":"company","lineage":["https://openalex.org/I4210097491"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David A. Hinds","raw_affiliation_strings":["1 \u00a01Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA and 223andMe, Inc., Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA and 223andMe, Inc., Mountain View, CA, USA","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210097491"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034697802"],"corresponding_institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210097491"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":26.6534,"has_fulltext":true,"cited_by_count":708,"citation_normalized_percentile":{"value":0.99746121,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"31","issue":"5","first_page":"782","last_page":"784"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11577","display_name":"Cognitive Abilities and Testing","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.8263993859291077},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7409080266952515},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.670325756072998},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5123752355575562},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44154390692710876},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32590532302856445},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3253953456878662},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.14494341611862183},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.08410745859146118},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07673472166061401}],"concepts":[{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.8263993859291077},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7409080266952515},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.670325756072998},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5123752355575562},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44154390692710876},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32590532302856445},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3253953456878662},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.14494341611862183},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.08410745859146118},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07673472166061401}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/782/13201353/btu704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25338720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25338720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4341061","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4341061","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/782/13201353/btu704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2334082896","display_name":null,"funder_award_id":"R01 HL117626","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G625911369","display_name":null,"funder_award_id":"R01HG007022","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7704018871","display_name":null,"funder_award_id":"U01HG006513","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163104142.pdf","grobid_xml":"https://content.openalex.org/works/W2163104142.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1538524809","https://openalex.org/W2030148262","https://openalex.org/W2033913430","https://openalex.org/W2047121664","https://openalex.org/W2051441176","https://openalex.org/W2059542829","https://openalex.org/W2082122713","https://openalex.org/W2096791516","https://openalex.org/W2111307685","https://openalex.org/W2132731072","https://openalex.org/W2134599124","https://openalex.org/W2149791927","https://openalex.org/W2161633633","https://openalex.org/W3004157836","https://openalex.org/W4240204556","https://openalex.org/W6632240119"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W3131163342","https://openalex.org/W2166271660","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2002770077","https://openalex.org/W2361728394","https://openalex.org/W2352631095","https://openalex.org/W2408577762"],"abstract_inverted_index":{"UNLABELLED:":[0],"Genotype":[1],"imputation":[2,33,62,70],"is":[3,91],"a":[4],"key":[5],"step":[6],"in":[7],"the":[8,28,45,52],"analysis":[9],"of":[10,35,54,74],"genome-wide":[11],"association":[12],"studies.":[13],"Upcoming":[14],"very":[15],"large":[16],"reference":[17],"panels,":[18],"such":[19],"as":[20],"those":[21],"from":[22],"The":[23],"1000":[24],"Genomes":[25],"Project":[26],"and":[27,37,89],"Haplotype":[29],"Consortium,":[30],"will":[31,42],"improve":[32],"quality":[34],"rare":[36],"less":[38],"common":[39],"variants,":[40],"but":[41],"also":[43],"increase":[44],"computational":[46],"burden.":[47],"Here,":[48],"we":[49],"demonstrate":[50],"how":[51],"application":[53],"software":[55],"engineering":[56],"techniques":[57],"can":[58],"help":[59],"to":[60],"keep":[61],"broadly":[63],"accessible.":[64],"Overall,":[65],"these":[66],"improvements":[67],"speed":[68],"up":[69],"by":[71],"an":[72],"order":[73],"magnitude":[75],"compared":[76],"with":[77],"our":[78],"previous":[79],"implementation.":[80],"AVAILABILITY":[81],"AND":[82],"IMPLEMENTATION:":[83],"minimac2,":[84],"including":[85],"source":[86],"code,":[87],"documentation,":[88],"examples":[90],"available":[92],"at":[93],"http://genome.sph.umich.edu/wiki/Minimac2":[94]},"counts_by_year":[{"year":2026,"cited_by_count":32},{"year":2025,"cited_by_count":100},{"year":2024,"cited_by_count":101},{"year":2023,"cited_by_count":90},{"year":2022,"cited_by_count":73},{"year":2021,"cited_by_count":67},{"year":2020,"cited_by_count":27},{"year":2019,"cited_by_count":34},{"year":2018,"cited_by_count":59},{"year":2017,"cited_by_count":53},{"year":2016,"cited_by_count":56},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
