{"id":"https://openalex.org/W2164145247","doi":"https://doi.org/10.1093/bioinformatics/btu699","title":"Detecting time periods of differential gene expression using Gaussian processes: an application to endothelial cells exposed to radiotherapy dose fraction","display_name":"Detecting time periods of differential gene expression using Gaussian processes: an application to endothelial cells exposed to radiotherapy dose fraction","publication_year":2014,"publication_date":"2014-10-28","ids":{"openalex":"https://openalex.org/W2164145247","doi":"https://doi.org/10.1093/bioinformatics/btu699","mag":"2164145247","pmid":"https://pubmed.ncbi.nlm.nih.gov/25355790"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu699","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu699","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/728/17124111/btu699.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/728/17124111/btu699.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101444999","display_name":"Markus Heinonen","orcid":"https://orcid.org/0000-0002-7741-2279"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Markus Heinonen","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","Algorithms and Models for Integrative Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]},{"raw_affiliation_string":"Algorithms and Models for Integrative Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023648534","display_name":"Olivier Guipaud","orcid":"https://orcid.org/0000-0001-8165-2075"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Guipaud","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084179364","display_name":"Fabien Milliat","orcid":"https://orcid.org/0000-0001-8249-9498"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabien Milliat","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104363025","display_name":"Val\u00e9rie Buard","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Val\u00e9rie Buard","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050094296","display_name":"B\u00e9atrice Micheau","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"B\u00e9atrice Micheau","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058736373","display_name":"Georges Tarlet","orcid":"https://orcid.org/0000-0002-4756-5127"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Georges Tarlet","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089314951","display_name":"Marc Benderitter","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marc Benderitter","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062973640","display_name":"Farida Zehraoui","orcid":"https://orcid.org/0000-0001-6278-1680"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Farida Zehraoui","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066766964","display_name":"Florence d\u2019Alch\u00e9\u2013Buc","orcid":"https://orcid.org/0000-0002-8353-0589"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Florence d\u2019Alch\u00e9-Buc","raw_affiliation_strings":["1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","Algorithms and Models for Integrative Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IBISC, Universite d\u2019\u00c9vry Val d\u2019Essonne, 23 Boulevard de France, 91025 \u00c9vry, France, 2AMIB, INRIA-Saclay, LRI UMR CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France, and 3Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire, LRTE, 92262 Fontenay-aux-roses, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"]},{"raw_affiliation_string":"Algorithms and Models for Integrative Biology","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066766964","https://openalex.org/A5101444999"],"corresponding_institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210107733","https://openalex.org/I4210144804","https://openalex.org/I88467170"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.43,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.81452049,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"31","issue":"5","first_page":"728","last_page":"735"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.37470000982284546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.37470000982284546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11599999666213989,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11359","display_name":"Effects of Radiation Exposure","score":0.11569999903440475,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fraction","display_name":"Fraction (chemistry)","score":0.7167434096336365},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.6379539966583252},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5295088291168213},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.5064796209335327},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48721545934677124},{"id":"https://openalex.org/keywords/radiation-therapy","display_name":"Radiation therapy","score":0.4804377257823944},{"id":"https://openalex.org/keywords/gaussian-process","display_name":"Gaussian process","score":0.4751857817173004},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4551122784614563},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4136672616004944},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.41309675574302673},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37951916456222534},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3563333749771118},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33672672510147095},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.32556265592575073},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.30206426978111267},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2868352234363556},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2562969923019409},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21489489078521729},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.14018502831459045},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.13052743673324585},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09582659602165222}],"concepts":[{"id":"https://openalex.org/C149629883","wikidata":"https://www.wikidata.org/wiki/Q660926","display_name":"Fraction (chemistry)","level":2,"score":0.7167434096336365},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.6379539966583252},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5295088291168213},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.5064796209335327},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48721545934677124},{"id":"https://openalex.org/C509974204","wikidata":"https://www.wikidata.org/wiki/Q180507","display_name":"Radiation therapy","level":2,"score":0.4804377257823944},{"id":"https://openalex.org/C61326573","wikidata":"https://www.wikidata.org/wiki/Q1496376","display_name":"Gaussian process","level":3,"score":0.4751857817173004},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4551122784614563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4136672616004944},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.41309675574302673},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37951916456222534},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3563333749771118},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33672672510147095},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.32556265592575073},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.30206426978111267},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2868352234363556},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2562969923019409},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21489489078521729},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.14018502831459045},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.13052743673324585},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09582659602165222},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004307","descriptor_name":"Dose-Response Relationship, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004307","descriptor_name":"Dose-Response Relationship, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004307","descriptor_name":"Dose-Response Relationship, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000532","qualifier_name":"radiotherapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000532","qualifier_name":"radiotherapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000532","qualifier_name":"radiotherapy","is_major_topic":false},{"descriptor_ui":"D011878","descriptor_name":"Radiotherapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011878","descriptor_name":"Radiotherapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011878","descriptor_name":"Radiotherapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D061307","descriptor_name":"Human Umbilical Vein Endothelial Cells","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu699","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu699","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/728/17124111/btu699.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25355790","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25355790","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-01154010v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01154010","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2015, 31 (5), pp.728--735. &#x27E8;10.1093/bioinformatics/btu699&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu699","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu699","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/5/728/17124111/btu699.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W62387039","https://openalex.org/W1746819321","https://openalex.org/W1961680179","https://openalex.org/W1969289662","https://openalex.org/W1970390603","https://openalex.org/W1982415526","https://openalex.org/W1995491959","https://openalex.org/W2017545485","https://openalex.org/W2022472106","https://openalex.org/W2034071085","https://openalex.org/W2044351980","https://openalex.org/W2049457931","https://openalex.org/W2067306349","https://openalex.org/W2074765241","https://openalex.org/W2077254675","https://openalex.org/W2080772875","https://openalex.org/W2093017030","https://openalex.org/W2100707780","https://openalex.org/W2102220596","https://openalex.org/W2104911495","https://openalex.org/W2104956231","https://openalex.org/W2105559737","https://openalex.org/W2109419913","https://openalex.org/W2124584833","https://openalex.org/W2125373697","https://openalex.org/W2141407136","https://openalex.org/W2149277015","https://openalex.org/W2149566602","https://openalex.org/W2151531457","https://openalex.org/W2151808499","https://openalex.org/W2153347097","https://openalex.org/W2156408102","https://openalex.org/W2158217645","https://openalex.org/W2161175828","https://openalex.org/W2163811214","https://openalex.org/W2166920812","https://openalex.org/W2612972698","https://openalex.org/W2990138404","https://openalex.org/W3003413895","https://openalex.org/W3104024536","https://openalex.org/W4211049957","https://openalex.org/W6602510868","https://openalex.org/W6640929787","https://openalex.org/W6645841098","https://openalex.org/W6675423377","https://openalex.org/W6678740595","https://openalex.org/W6680991062","https://openalex.org/W6682399247","https://openalex.org/W6682443497"],"related_works":["https://openalex.org/W1191014223","https://openalex.org/W178140751","https://openalex.org/W1137063513","https://openalex.org/W4387682966","https://openalex.org/W3093605827","https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W2203654542","https://openalex.org/W2169866437","https://openalex.org/W1964286703"],"abstract_inverted_index":{"MOTIVATION:":[0],"Identifying":[1],"the":[2,25,64,81,87,95,116,144,147,161,164,178,191,207,223],"set":[3],"of":[4,92,101,146,166,193,209,226],"genes":[5,93,184],"differentially":[6],"expressed":[7],"along":[8,48,60,140],"time":[9,16,23,50,61,84],"is":[10,28,133,237],"an":[11,172,186],"important":[12],"task":[13],"in":[14,185,195],"two-sample":[15],"course":[17],"experiments.":[18,130],"Furthermore,":[19],"estimating":[20],"at":[21,239],"which":[22],"periods":[24],"differential":[26,40,67,82,210],"expression":[27,68,83,103,118,211],"present":[29],"can":[30],"provide":[31],"additional":[32],"insight":[33],"into":[34,222],"temporal":[35,66,96],"gene":[36,102,216],"functions.":[37],"The":[38,131],"current":[39],"detection":[41],"methods":[42],"are":[43],"designed":[44],"to":[45,62,79,90,104,135,163,176,188,229],"detect":[46],"difference":[47],"observation":[49],"intervals":[51],"or":[52,137],"on":[53,123,126,149],"single":[54],"measurement":[55],"points,":[56],"warranting":[57],"dense":[58],"measurements":[59,139],"characterize":[63],"full":[65],"patterns.":[69],"RESULTS:":[70],"We":[71,108,142,158],"propose":[72],"a":[73,105,110,204],"novel":[74,111],"Bayesian":[75],"likelihood":[76],"ratio":[77,88],"test":[78,89],"estimate":[80],"periods.":[85],"Applying":[86],"systems":[91],"provides":[94],"response":[97,225],"timings":[98],"and":[99,128,153,198,215],"durations":[100],"biological":[106],"condition.":[107],"introduce":[109],"non-stationary":[112],"Gaussian":[113],"process":[114],"as":[115],"underlying":[117],"model,":[119],"with":[120],"major":[121],"improvements":[122],"model":[124],"fitness":[125],"perturbation":[127],"stress":[129,175],"method":[132,148,162],"robust":[134],"uneven":[136],"sparse":[138],"time.":[141],"assess":[143],"performance":[145],"realistically":[150],"simulated":[151],"dataset":[152],"compare":[154],"against":[155],"state-of-the-art":[156],"methods.":[157],"additionally":[159],"apply":[160],"analysis":[165],"primary":[167],"human":[168],"endothelial":[169,227],"cells":[170,228],"under":[171],"ionizing":[173],"radiation":[174],"study":[177],"transcriptional":[179],"perturbations":[180],"over":[181],"283":[182],"measured":[183],"attempt":[187],"better":[189],"understand":[190],"role":[192],"endothelium":[194],"both":[196],"normal":[197],"cancer":[199],"tissues":[200],"during":[201],"radiotherapy.":[202],"As":[203],"result,":[205],"using":[206],"cascade":[208],"periods,":[212],"domain":[213],"literature":[214],"enrichment":[217],"analysis,":[218],"we":[219],"gain":[220],"insights":[221],"dynamic":[224],"irradiation.":[230],"AVAILABILITY":[231],"AND":[232],"IMPLEMENTATION:":[233],"R":[234],"package":[235],"'nsgp'":[236],"available":[238],"www.ibisc.fr/en/logiciels_arobas.":[240]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
