{"id":"https://openalex.org/W2140099276","doi":"https://doi.org/10.1093/bioinformatics/btu684","title":"DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis","display_name":"DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis","publication_year":2014,"publication_date":"2014-10-17","ids":{"openalex":"https://openalex.org/W2140099276","doi":"https://doi.org/10.1093/bioinformatics/btu684","mag":"2140099276","pmid":"https://pubmed.ncbi.nlm.nih.gov/25677125"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu684","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu684","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/4/608/49011315/bioinformatics_31_4_608.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/4/608/49011315/bioinformatics_31_4_608.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027320896","display_name":"Guangchuang Yu","orcid":"https://orcid.org/0000-0002-6485-8781"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Guangchuang Yu","raw_affiliation_strings":["1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China","institution_ids":["https://openalex.org/I159948400","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044413679","display_name":"Ligen Wang","orcid":"https://orcid.org/0000-0003-2659-9528"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Li-Gen Wang","raw_affiliation_strings":["1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China","institution_ids":["https://openalex.org/I159948400","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047326798","display_name":"Guang\u2010Rong Yan","orcid":"https://orcid.org/0000-0003-4859-8710"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Guang-Rong Yan","raw_affiliation_strings":["1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China","institution_ids":["https://openalex.org/I159948400","https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100646656","display_name":"Qing\u2010Yu He","orcid":"https://orcid.org/0000-0003-0503-9492"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Qing-Yu He","raw_affiliation_strings":["1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 \u00a01State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, 2Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou 510632 and 3Guangdong Information Center, Guangzhou 510031, China","institution_ids":["https://openalex.org/I159948400","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5027320896","https://openalex.org/A5100646656"],"corresponding_institution_ids":["https://openalex.org/I159948400","https://openalex.org/I889458895"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.0308,"has_fulltext":true,"cited_by_count":1385,"citation_normalized_percentile":{"value":0.97957208,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"31","issue":"4","first_page":"608","last_page":"609"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6843000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6843000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.2736999988555908,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.015799999237060547,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9421578645706177},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6618180871009827},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6386603116989136},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5819055438041687},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5461188554763794},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5320509672164917},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5254240036010742},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4275752604007721},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4250735342502594},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4108760952949524},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3435589075088501},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22336897253990173},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18233099579811096},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1783798635005951},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10659545660018921},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.0997912585735321},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08594068884849548}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9421578645706177},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6618180871009827},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6386603116989136},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5819055438041687},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5461188554763794},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5320509672164917},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5254240036010742},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4275752604007721},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4250735342502594},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4108760952949524},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3435589075088501},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22336897253990173},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18233099579811096},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1783798635005951},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10659545660018921},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0997912585735321},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08594068884849548},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu684","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu684","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/4/608/49011315/bioinformatics_31_4_608.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25677125","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25677125","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu684","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu684","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/4/608/49011315/bioinformatics_31_4_608.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140099276.pdf","grobid_xml":"https://content.openalex.org/works/W2140099276.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1647729745","https://openalex.org/W1659833910","https://openalex.org/W1977878983","https://openalex.org/W2035618305","https://openalex.org/W2100761975","https://openalex.org/W2121343862","https://openalex.org/W2128049108","https://openalex.org/W2146777736","https://openalex.org/W2159092541","https://openalex.org/W2159941448","https://openalex.org/W2912485311","https://openalex.org/W2953332543","https://openalex.org/W6636975626","https://openalex.org/W6675339850"],"related_works":["https://openalex.org/W43224192","https://openalex.org/W90653389","https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W2140556695","https://openalex.org/W1999129612","https://openalex.org/W4375856186","https://openalex.org/W1965530278","https://openalex.org/W2009940763","https://openalex.org/W4361192415"],"abstract_inverted_index":{"SUMMARY:":[0],"Disease":[1],"ontology":[2],"(DO)":[3],"annotates":[4],"human":[5],"genes":[6,39],"in":[7,16,53,85],"the":[8,45],"context":[9],"of":[10,47,50,74],"disease.":[11],"DO":[12,36],"is":[13,27,98,105],"important":[14],"annotation":[15],"translating":[17],"molecular":[18],"findings":[19],"from":[20],"high-throughput":[21,75],"data":[22,124],"to":[23,43,69,81],"clinical":[24],"relevance.":[25],"DOSE":[26,104],"an":[28],"R":[29],"package":[30],"providing":[31],"semantic":[32],"similarity":[33],"computations":[34],"among":[35,95],"terms":[37],"and":[38,49,61,89,113],"which":[40],"allows":[41,79],"biologists":[42,80],"explore":[44],"similarities":[46],"diseases":[48],"gene":[51,62,96],"functions":[52],"disease":[54,72,83,92],"perspective.":[55],"Enrichment":[56],"analyses":[57],"including":[58],"hypergeometric":[59],"model":[60],"set":[63],"enrichment":[64],"analysis":[65],"are":[66,115,125],"also":[67,99],"implemented":[68],"support":[70],"discovering":[71],"associations":[73],"biological":[76,87],"data.":[77],"This":[78],"verify":[82],"relevance":[84],"a":[86],"experiment":[88],"identify":[90],"unexpected":[91],"associations.":[93],"Comparison":[94],"clusters":[97],"supported.":[100],"AVAILABILITY":[101],"AND":[102],"IMPLEMENTATION:":[103],"released":[106],"under":[107],"Artistic-2.0":[108],"License.":[109],"The":[110],"source":[111],"code":[112],"documents":[114],"freely":[116],"available":[117,126],"through":[118],"Bioconductor":[119],"(http://www.bioconductor.org/packages/release/bioc/html/DOSE.html).":[120],"SUPPLEMENTARY":[121],"INFORMATION:":[122],"Supplementary":[123],"at":[127],"Bioinformatics":[128],"online.":[129],"CONTACT:":[130],"gcyu@connect.hku.hk":[131],"or":[132],"tqyhe@jnu.edu.cn.":[133]},"counts_by_year":[{"year":2026,"cited_by_count":77},{"year":2025,"cited_by_count":189},{"year":2024,"cited_by_count":297},{"year":2023,"cited_by_count":205},{"year":2022,"cited_by_count":192},{"year":2021,"cited_by_count":156},{"year":2020,"cited_by_count":99},{"year":2019,"cited_by_count":62},{"year":2018,"cited_by_count":54},{"year":2017,"cited_by_count":28},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2025-10-10T00:00:00"}
