{"id":"https://openalex.org/W2114162221","doi":"https://doi.org/10.1093/bioinformatics/btu626","title":"PDB-wide collection of binding data: current status of the PDBbind database","display_name":"PDB-wide collection of binding data: current status of the PDBbind database","publication_year":2014,"publication_date":"2014-10-09","ids":{"openalex":"https://openalex.org/W2114162221","doi":"https://doi.org/10.1093/bioinformatics/btu626","mag":"2114162221","pmid":"https://pubmed.ncbi.nlm.nih.gov/25301850"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu626","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu626","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/3/405/49012002/bioinformatics_31_3_405.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/3/405/49012002/bioinformatics_31_3_405.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100753007","display_name":"Zhihai Liu","orcid":"https://orcid.org/0000-0002-4527-8829"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Zhihai Liu","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101927180","display_name":"Yan Li","orcid":"https://orcid.org/0000-0001-7993-1294"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100613345","display_name":"Li Han","orcid":"https://orcid.org/0000-0002-3654-171X"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Li Han","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100428364","display_name":"Jie Li","orcid":"https://orcid.org/0009-0003-0046-5596"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Jie Li","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454111","display_name":"Jie Liu","orcid":"https://orcid.org/0000-0002-4828-3244"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Jie Liu","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042288612","display_name":"Zhixiong Zhao","orcid":"https://orcid.org/0000-0002-1876-1284"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Zhixiong Zhao","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101430135","display_name":"Wei Nie","orcid":"https://orcid.org/0000-0003-0060-9863"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Wei Nie","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100373052","display_name":"Yuchen Liu","orcid":"https://orcid.org/0000-0002-5376-0017"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Yuchen Liu","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016374232","display_name":"Renxiao Wang","orcid":"https://orcid.org/0000-0003-0485-0259"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Renxiao Wang","raw_affiliation_strings":["1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032 and 2 State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366","https://openalex.org/I111950717"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":8.6819,"has_fulltext":true,"cited_by_count":667,"citation_normalized_percentile":{"value":0.9847963,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"31","issue":"3","first_page":"405","last_page":"412"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.16779999434947968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.16779999434947968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.12710000574588776,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.0722000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.8837699890136719},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.6715887784957886},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6649035215377808},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6478891372680664},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38969191908836365},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33853572607040405},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32633286714553833},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2727426290512085},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09429553151130676}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.8837699890136719},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.6715887784957886},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6649035215377808},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6478891372680664},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38969191908836365},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33853572607040405},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32633286714553833},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2727426290512085},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09429553151130676}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btu626","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu626","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/3/405/49012002/bioinformatics_31_3_405.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25301850","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25301850","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu626","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu626","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/3/405/49012002/bioinformatics_31_3_405.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G4852886146","display_name":null,"funder_award_id":"2012AA020308","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"}],"funders":[{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114162221.pdf","grobid_xml":"https://content.openalex.org/works/W2114162221.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1601495365","https://openalex.org/W1969017960","https://openalex.org/W1969765360","https://openalex.org/W1973433643","https://openalex.org/W1974324284","https://openalex.org/W1977472669","https://openalex.org/W1979914800","https://openalex.org/W1993046136","https://openalex.org/W1993403967","https://openalex.org/W1995808589","https://openalex.org/W1998568556","https://openalex.org/W1998643444","https://openalex.org/W2013085020","https://openalex.org/W2030286884","https://openalex.org/W2038147869","https://openalex.org/W2041046009","https://openalex.org/W2043537391","https://openalex.org/W2043950247","https://openalex.org/W2049185580","https://openalex.org/W2065326396","https://openalex.org/W2066515324","https://openalex.org/W2075580221","https://openalex.org/W2077004593","https://openalex.org/W2084521509","https://openalex.org/W2085315829","https://openalex.org/W2092285329","https://openalex.org/W2094090446","https://openalex.org/W2096541451","https://openalex.org/W2096864392","https://openalex.org/W2103017472","https://openalex.org/W2110120447","https://openalex.org/W2112804624","https://openalex.org/W2115086145","https://openalex.org/W2120138074","https://openalex.org/W2128332459","https://openalex.org/W2134967712","https://openalex.org/W2137841449","https://openalex.org/W2140763734","https://openalex.org/W2143567718","https://openalex.org/W2146465875","https://openalex.org/W2171716824","https://openalex.org/W4210483668","https://openalex.org/W6635610719"],"related_works":["https://openalex.org/W2020669016","https://openalex.org/W2088162897","https://openalex.org/W2090630809","https://openalex.org/W4387804157","https://openalex.org/W2106612397","https://openalex.org/W2518314460","https://openalex.org/W2401430279","https://openalex.org/W2119891507","https://openalex.org/W2089869950","https://openalex.org/W2589205199"],"abstract_inverted_index":{"MOTIVATION:":[0],"Molecular":[1],"recognition":[2],"between":[3,64],"biological":[4],"macromolecules":[5],"and":[6,21,67,121,140],"organic":[7],"small":[8],"molecules":[9],"plays":[10],"an":[11,36,98],"important":[12],"role":[13],"in":[14,34,89,115,157],"various":[15],"life":[16],"processes.":[17],"Both":[18],"structural":[19,65],"information":[20,66],"binding":[22,47,108],"data":[23,48,110,184],"of":[24,70,125,144,154,166],"biomolecular":[25,51,71,113],"complexes":[26,52,114,120],"are":[27,169,185],"indispensable":[28],"for":[29,49,77,111,137],"depicting":[30],"the":[31,50,54,62,91,133,141,158,173],"underlying":[32],"mechanism":[33],"such":[35],"event.":[37],"The":[38,101],"PDBbind":[39,92,139,155],"database":[40,93,168],"was":[41],"created":[42],"to":[43],"collect":[44],"experimentally":[45],"measured":[46],"throughout":[53],"Protein":[55],"Data":[56],"Bank":[57],"(PDB).":[58],"It":[59],"thus":[60],"provides":[61,106],"linkage":[63],"energetic":[68],"properties":[69],"complexes,":[72],"which":[73],"is":[74],"especially":[75],"desirable":[76],"computational":[78],"studies":[79],"or":[80],"statistical":[81],"analyses.":[82],"RESULTS:":[83],"Since":[84],"its":[85],"first":[86],"public":[87],"release":[88,103],"2004,":[90],"has":[94],"been":[95],"updated":[96,142],"on":[97],"annual":[99],"basis.":[100],"latest":[102],"(version":[104],"2013)":[105],"experimental":[107],"affinity":[109],"10,776":[112],"PDB,":[116],"including":[117],"8302":[118],"protein-ligand":[119],"2474":[122],"other":[123],"types":[124],"complexes.":[126],"In":[127],"this":[128,145,167],"article,":[129],"we":[130],"will":[131,148],"describe":[132],"current":[134],"methods":[135],"used":[136],"compiling":[138],"status":[143],"database.":[146],"We":[147],"also":[149],"review":[150],"some":[151],"typical":[152],"applications":[153],"published":[156],"scientific":[159],"literature.":[160],"AVAILABILITY":[161],"AND":[162],"IMPLEMENTATION:":[163],"All":[164],"contents":[165],"freely":[170],"accessible":[171],"at":[172,177,187],"PDBbind-CN":[174],"Web":[175],"server":[176],"http://www.pdbbind-cn.org/.":[178],"CONTACT:":[179],"wangrx@mail.sioc.ac.cn.":[180],"SUPPLEMENTARY":[181],"INFORMATION:":[182],"Supplementary":[183],"available":[186],"Bioinformatics":[188],"online.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":41},{"year":2025,"cited_by_count":104},{"year":2024,"cited_by_count":98},{"year":2023,"cited_by_count":85},{"year":2022,"cited_by_count":91},{"year":2021,"cited_by_count":63},{"year":2020,"cited_by_count":62},{"year":2019,"cited_by_count":34},{"year":2018,"cited_by_count":28},{"year":2017,"cited_by_count":26},{"year":2016,"cited_by_count":24},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-12T08:23:45.883708","created_date":"2025-10-10T00:00:00"}
