{"id":"https://openalex.org/W2144143696","doi":"https://doi.org/10.1093/bioinformatics/btu612","title":"NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks","display_name":"NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks","publication_year":2014,"publication_date":"2014-09-21","ids":{"openalex":"https://openalex.org/W2144143696","doi":"https://doi.org/10.1093/bioinformatics/btu612","mag":"2144143696","pmid":"https://pubmed.ncbi.nlm.nih.gov/25246431"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu612","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu612","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/277/49011152/bioinformatics_31_2_277.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/277/49011152/bioinformatics_31_2_277.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054811862","display_name":"Daniel Hurley","orcid":"https://orcid.org/0000-0003-0171-1982"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Daniel G. Hurley","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048486605","display_name":"Joseph Cursons","orcid":"https://orcid.org/0000-0002-5053-4540"},"institutions":[{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Joseph Cursons","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035215783","display_name":"Yi Kan Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Yi Kan Wang","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003238807","display_name":"David Budden","orcid":"https://orcid.org/0000-0003-4372-8985"},"institutions":[{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"David M. Budden","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064023142","display_name":"Cristin G. Print","orcid":"https://orcid.org/0000-0001-8345-7812"},"institutions":[{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]},{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Cristin G. Print","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I154130895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083478373","display_name":"Edmund J. Crampin","orcid":"https://orcid.org/0000-0001-6569-9543"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Edmund J. Crampin","raw_affiliation_strings":["1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada"],"affiliations":[{"raw_affiliation_string":"1 Auckland Bioengineering Institute, University of Auckland, Auckland 1001, New Zealand, 2 Department of Molecular Medicine and Pathology, School of Medical Sciences, Faculty of Medical and Health Sciences,University of Auckland, Auckland 1001, New Zealand, 3 Bioinformatics Institute, University of Auckland, Auckland 1001, New Zealand, 4 Maurice Wilkins Centre, University of Auckland, Auckland 1001, New Zealand, 5 Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia, 6 Department of Mathematics and Statistics, University of Melbourne 7 School of Medicine, University of Melbourne, Victoria 3010, Australia and 8 Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, Canada","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5054811862"],"corresponding_institution_ids":["https://openalex.org/I154130895","https://openalex.org/I4210129442"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5338,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.8266751,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"31","issue":"2","first_page":"277","last_page":"278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7897929549217224},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7874165177345276},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6122951507568359},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6010836958885193},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5789318084716797},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5250344276428223},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.49604734778404236},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4892098903656006},{"id":"https://openalex.org/keywords/type-inference","display_name":"Type inference","score":0.45991531014442444},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.44797438383102417},{"id":"https://openalex.org/keywords/inference-engine","display_name":"Inference engine","score":0.422626793384552},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.41551318764686584},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4124917984008789},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3569773733615875},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3422694206237793},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3216204047203064},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.252602219581604},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19175580143928528}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7897929549217224},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7874165177345276},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6122951507568359},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6010836958885193},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5789318084716797},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5250344276428223},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.49604734778404236},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4892098903656006},{"id":"https://openalex.org/C198370458","wikidata":"https://www.wikidata.org/wiki/Q586459","display_name":"Type inference","level":3,"score":0.45991531014442444},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.44797438383102417},{"id":"https://openalex.org/C46743427","wikidata":"https://www.wikidata.org/wiki/Q1341685","display_name":"Inference engine","level":3,"score":0.422626793384552},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.41551318764686584},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4124917984008789},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3569773733615875},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3422694206237793},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3216204047203064},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.252602219581604},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19175580143928528},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu612","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu612","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/277/49011152/bioinformatics_31_2_277.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25246431","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25246431","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmid:25948714","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25948714","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu612","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu612","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/2/277/49011152/bioinformatics_31_2_277.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144143696.pdf","grobid_xml":"https://content.openalex.org/works/W2144143696.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1995008770","https://openalex.org/W2062533676","https://openalex.org/W2063032535","https://openalex.org/W2105129830","https://openalex.org/W2108421561","https://openalex.org/W2133066500","https://openalex.org/W2146053439","https://openalex.org/W2147566730","https://openalex.org/W2161511352","https://openalex.org/W2163296115","https://openalex.org/W3099289621","https://openalex.org/W3105461111"],"related_works":["https://openalex.org/W4251298892","https://openalex.org/W2356013541","https://openalex.org/W2385444679","https://openalex.org/W3133868776","https://openalex.org/W2798849146","https://openalex.org/W2108774277","https://openalex.org/W4381278040","https://openalex.org/W2380427002","https://openalex.org/W2040991168","https://openalex.org/W4249795164"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}