{"id":"https://openalex.org/W2061849341","doi":"https://doi.org/10.1093/bioinformatics/btu608","title":"Improved rat genome gene prediction by integration of ESTs with RNA-Seq information","display_name":"Improved rat genome gene prediction by integration of ESTs with RNA-Seq information","publication_year":2014,"publication_date":"2014-09-12","ids":{"openalex":"https://openalex.org/W2061849341","doi":"https://doi.org/10.1093/bioinformatics/btu608","mag":"2061849341","pmid":"https://pubmed.ncbi.nlm.nih.gov/25217576"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu608","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/25/49010952/bioinformatics_31_1_25.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/25/49010952/bioinformatics_31_1_25.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082172794","display_name":"Liping Li","orcid":"https://orcid.org/0000-0002-7785-929X"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Liping Li","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101850384","display_name":"Enguo Chen","orcid":"https://orcid.org/0000-0003-2338-8610"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Enguo Chen","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101456900","display_name":"Chun Yang","orcid":"https://orcid.org/0000-0001-5262-3048"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Chun Yang","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100751138","display_name":"Jun Zhu","orcid":"https://orcid.org/0000-0003-4573-8933"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jun Zhu","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091714061","display_name":"Pushkala Jayaraman","orcid":"https://orcid.org/0000-0003-1159-8354"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Pushkala Jayaraman","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037969758","display_name":"Jeffrey L De Pons","orcid":"https://orcid.org/0000-0001-7783-1556"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jeffrey De Pons","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073164917","display_name":"Catherine C. Kaczorowski","orcid":"https://orcid.org/0000-0001-5430-0816"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Catherine C. Kaczorowski","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070802128","display_name":"Howard J. Jacob","orcid":"https://orcid.org/0000-0002-1521-3055"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Howard J. Jacob","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030544411","display_name":"Andrew S. Greene","orcid":"https://orcid.org/0000-0002-3191-2112"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Andrew S. Greene","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015643099","display_name":"Matthew R. Hodges","orcid":"https://orcid.org/0000-0002-1692-9055"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Matthew R. Hodges","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071829883","display_name":"Allen W. Cowley","orcid":"https://orcid.org/0000-0002-0801-6248"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Allen W. Cowley","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081888342","display_name":"Mingyu Liang","orcid":"https://orcid.org/0000-0002-6970-989X"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Mingyu Liang","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056079345","display_name":"Haiming Xu","orcid":"https://orcid.org/0000-0002-0675-4087"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Haiming Xu","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100714943","display_name":"Pengyuan Liu","orcid":"https://orcid.org/0000-0002-8386-8416"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Pengyuan Liu","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100627527","display_name":"Yan L\u00fc","orcid":"https://orcid.org/0000-0002-5004-4656"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I4210137217","display_name":"Women's Hospital, School of Medicine, Zhejiang University","ror":"https://ror.org/042t7yh44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137217"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yan Lu","raw_affiliation_strings":["1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Gynecologic Oncology, The Affiliated Women\u2019s Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310006, 2 Institute of Bioinformatics, Zhejiang University, Hangzhou, Zhejiang 310058, China, 3 Division of Respiratory Medicine, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310058, China, 4 Department of Physiology and the Cancer Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 5 Human Molecular and Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5056079345","https://openalex.org/A5100627527","https://openalex.org/A5100714943"],"corresponding_institution_ids":["https://openalex.org/I204308271","https://openalex.org/I2802390878","https://openalex.org/I4210137217"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2599,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.56446117,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"31","issue":"1","first_page":"25","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.24210000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.24210000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1289999932050705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07530000060796738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.714887797832489},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7054749727249146},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7024953365325928},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5676969289779663},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.5264445543289185},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5240499973297119},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.499392032623291},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4914134740829468},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.47803956270217896},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.45308107137680054},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.43191012740135193},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4259078800678253},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.17575138807296753}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.714887797832489},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7054749727249146},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7024953365325928},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5676969289779663},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.5264445543289185},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5240499973297119},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.499392032623291},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4914134740829468},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.47803956270217896},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.45308107137680054},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.43191012740135193},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4259078800678253},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17575138807296753}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu608","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/25/49010952/bioinformatics_31_1_25.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25217576","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25217576","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4296142","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4296142","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu608","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/31/1/25/49010952/bioinformatics_31_1_25.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G2815817851","display_name":null,"funder_award_id":"R00 HL097033","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7062658787","display_name":null,"funder_award_id":"K99 AG039511","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"}],"funders":[{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2061849341.pdf"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1487554690","https://openalex.org/W1981509058","https://openalex.org/W2020336239","https://openalex.org/W2059846157","https://openalex.org/W2097040991","https://openalex.org/W2097065948","https://openalex.org/W2098832713","https://openalex.org/W2100353278","https://openalex.org/W2101466802","https://openalex.org/W2108234281","https://openalex.org/W2110065044","https://openalex.org/W2113000643","https://openalex.org/W2136145671","https://openalex.org/W2141458291","https://openalex.org/W2153089557","https://openalex.org/W2159833474","https://openalex.org/W2164683872","https://openalex.org/W2168798091","https://openalex.org/W4293196852","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W1999129612","https://openalex.org/W2162782320","https://openalex.org/W2009940763","https://openalex.org/W3111061871","https://openalex.org/W1760213857","https://openalex.org/W2059565715","https://openalex.org/W110079389","https://openalex.org/W2099626126","https://openalex.org/W2043778888","https://openalex.org/W45826765"],"abstract_inverted_index":{"MOTIVATION:":[0],"RNA-Seq":[1,35,94,163,192],"(also":[2],"called":[3],"whole-transcriptome":[4],"sequencing)":[5],"is":[6,28,57,68],"an":[7,209],"emerging":[8],"technology":[9],"that":[10,162],"uses":[11],"the":[12,29,43,108,111,137,142,175,178,200,216],"capabilities":[13],"of":[14,24,31,45,110,139,150,181,191],"next-generation":[15],"sequencing":[16],"to":[17,106],"detect":[18],"and":[19,39,48,62,86,102,130,168,172,184,205],"quantify":[20],"entire":[21],"transcripts.":[22],"One":[23],"its":[25],"important":[26,210],"applications":[27],"improvement":[30],"existing":[32],"genome":[33,81,146,166],"annotations.":[34],"provides":[36],"rapid,":[37],"comprehensive":[38],"cost-effective":[40],"tools":[41],"for":[42,212],"discovery":[44,61],"novel":[46,128,170,182],"genes":[47,171,183,196,224],"transcripts":[49,140],"compared":[50,83],"with":[51,84,156],"expressed":[52],"sequence":[53,64],"tag":[54],"(EST),":[55],"which":[56,134],"instrumental":[58],"in":[59,141,158,174,215],"gene":[60,63,154],"determination.":[65],"The":[66,222],"rat":[67,98,112,145],"widely":[69],"used":[70],"as":[71,82,208],"a":[72,78],"laboratory":[73],"disease":[74],"model,":[75],"but":[76],"has":[77],"less":[79],"well-annotated":[80],"humans":[85],"mice.":[87],"In":[88],"this":[89],"study,":[90],"we":[91],"incorporated":[92],"deep":[93],"data":[95,105],"from":[96],"three":[97],"tissues-bone":[99],"marrow,":[100],"brain":[101],"kidney-with":[103],"EST":[104],"improve":[107],"annotation":[109,167],"genome.":[113],"RESULTS:":[114],"Our":[115],"analysis":[116],"identified":[117],"32":[118],"197":[119],"transcripts,":[120,125],"including":[121],"13":[122,126],"461":[123],"known":[124],"934":[127],"isoforms":[129,173,185],"4802":[131],"new":[132],"genes,":[133],"almost":[135],"doubled":[136],"numbers":[138],"current":[143],"public":[144,159],"database":[147],"(rn5).":[148],"Comparisons":[149],"our":[151],"predicted":[152,195,223],"protein-coding":[153],"sets":[155],"those":[157],"datasets":[160],"suggest":[161],"significantly":[164],"improves":[165],"identifies":[169],"rat.":[176],"Importantly,":[177],"large":[179],"majority":[180],"are":[186,225],"supported":[187],"by":[188],"direct":[189],"evidence":[190],"experiments.":[193],"These":[194],"were":[197],"integrated":[198],"into":[199],"Rat":[201],"Genome":[202],"Database":[203],"(RGD)":[204],"can":[206],"serve":[207],"resource":[211],"functional":[213],"studies":[214],"research":[217],"community.":[218],"AVAILABILITY":[219],"AND":[220],"IMPLEMENTATION:":[221],"available":[226],"at":[227],"http://rgd.mcw.edu.":[228]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
