{"id":"https://openalex.org/W2051304374","doi":"https://doi.org/10.1093/bioinformatics/btu584","title":"Merging of multi-string BWTs with applications","display_name":"Merging of multi-string BWTs with applications","publication_year":2014,"publication_date":"2014-08-28","ids":{"openalex":"https://openalex.org/W2051304374","doi":"https://doi.org/10.1093/bioinformatics/btu584","mag":"2051304374","pmid":"https://pubmed.ncbi.nlm.nih.gov/25172922"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btu584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu584","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3524/7251126/btu584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3524/7251126/btu584.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071742303","display_name":"James Holt","orcid":"https://orcid.org/0000-0001-6411-9236"},"institutions":[{"id":"https://openalex.org/I1333535994","display_name":"University of North Carolina Health Care","ror":"https://ror.org/00qz24g20","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1333535994"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James Holt","raw_affiliation_strings":["Department of Computer Science, 201 S. Columbia St. UNC-CH, Chapel Hill, NC 27599, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 201 S. Columbia St. UNC-CH, Chapel Hill, NC 27599, USA","institution_ids":["https://openalex.org/I1333535994"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042463953","display_name":"Leonard McMillan","orcid":"https://orcid.org/0000-0002-8453-0847"},"institutions":[{"id":"https://openalex.org/I1333535994","display_name":"University of North Carolina Health Care","ror":"https://ror.org/00qz24g20","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1333535994"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonard McMillan","raw_affiliation_strings":["Department of Computer Science, 201 S. Columbia St. UNC-CH, Chapel Hill, NC 27599, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 201 S. Columbia St. UNC-CH, Chapel Hill, NC 27599, USA","institution_ids":["https://openalex.org/I1333535994"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5071742303"],"corresponding_institution_ids":["https://openalex.org/I1333535994"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.9197,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.96167258,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"30","issue":"24","first_page":"3524","last_page":"3531"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.9685729146003723},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.8605539798736572},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6430745124816895},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.6137964129447937},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.5225353240966797},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4762601852416992},{"id":"https://openalex.org/keywords/approximate-string-matching","display_name":"Approximate string matching","score":0.4600948691368103},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.4426423907279968},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36445698142051697},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.3195861577987671},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.24129903316497803},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24031275510787964},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.218354731798172},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13357627391815186},{"id":"https://openalex.org/keywords/theoretical-physics","display_name":"Theoretical physics","score":0.09053447842597961}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.9685729146003723},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.8605539798736572},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6430745124816895},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.6137964129447937},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.5225353240966797},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4762601852416992},{"id":"https://openalex.org/C32610155","wikidata":"https://www.wikidata.org/wiki/Q1798621","display_name":"Approximate string matching","level":3,"score":0.4600948691368103},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.4426423907279968},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36445698142051697},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.3195861577987671},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.24129903316497803},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24031275510787964},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.218354731798172},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13357627391815186},{"id":"https://openalex.org/C33332235","wikidata":"https://www.wikidata.org/wiki/Q18362","display_name":"Theoretical physics","level":1,"score":0.09053447842597961},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btu584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu584","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3524/7251126/btu584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25172922","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25172922","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4318930","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4318930","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btu584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btu584","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/30/24/3524/7251126/btu584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4300000071525574,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G3762771575","display_name":null,"funder_award_id":"P50MH090338","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4963808872","display_name":null,"funder_award_id":"NIH P50GM076468","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6781161026","display_name":null,"funder_award_id":"NIH P50","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6801924174","display_name":null,"funder_award_id":"P50HG006582","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8692387264","display_name":null,"funder_award_id":"P50GM076468","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2051304374.pdf","grobid_xml":"https://content.openalex.org/works/W2051304374.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W9498632","https://openalex.org/W1494345838","https://openalex.org/W1520575986","https://openalex.org/W1826264422","https://openalex.org/W1966822396","https://openalex.org/W1987760161","https://openalex.org/W2009783955","https://openalex.org/W2011699809","https://openalex.org/W2013697960","https://openalex.org/W2051511420","https://openalex.org/W2055043387","https://openalex.org/W2057791956","https://openalex.org/W2103441770","https://openalex.org/W2115501618","https://openalex.org/W2124985265","https://openalex.org/W2131106408","https://openalex.org/W2134819521","https://openalex.org/W2136145671","https://openalex.org/W2136651963","https://openalex.org/W2142749416","https://openalex.org/W2143423077","https://openalex.org/W2160969485","https://openalex.org/W2161048357","https://openalex.org/W2161488606","https://openalex.org/W2179064901","https://openalex.org/W2198888083","https://openalex.org/W2752061190","https://openalex.org/W2752853835","https://openalex.org/W3105789150","https://openalex.org/W4233928114","https://openalex.org/W4293196852","https://openalex.org/W6600407077","https://openalex.org/W6654031322","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W52396946","https://openalex.org/W2298204719","https://openalex.org/W1564013439","https://openalex.org/W2395807140","https://openalex.org/W2351800092","https://openalex.org/W2119057313","https://openalex.org/W3112977702","https://openalex.org/W3175353343","https://openalex.org/W2549495077","https://openalex.org/W3022344494"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,65,81],"novel":[3],"algorithm":[4],"that":[5],"merges":[6],"multi-string":[7,53,58,72,83],"BWTs":[8,54,73],"in":[9],"[Formula:":[10,43],"see":[11,44],"text]":[12,45],"time":[13],"where":[14,47],"LCS":[15],"is":[16,31,49,60],"the":[17,27,32,50,70],"length":[18,34],"of":[19,26,35,40,52,80],"their":[20],"longest":[21],"common":[22],"substring":[23],"between":[24],"any":[25],"inputs,":[28],"and":[29],"N":[30],"total":[33],"all":[36],"inputs":[37],"combined":[38],"(number":[39],"symbols)":[41],"using":[42],"bits":[46],"F":[48],"number":[51],"merged.":[55],"This":[56],"merged":[57,82],"BWT":[59,84],"also":[61],"shown":[62],"to":[63],"have":[64],"higher":[66],"compressibility":[67],"compared":[68],"with":[69],"input":[71],"separately.":[74],"Additionally,":[75],"we":[76],"explore":[77],"some":[78],"uses":[79],"for":[85],"bioinformatics":[86],"applications.":[87]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}